distrsGSE37704: Estimated read start and insert size distributions from MiSeq...

In casper: Characterization of Alternative Splicing based on Paired-End Reads

Description

We downloaded the fastq files, aligned with TopHat and processed with wrapKnown to obtain the estimated distributions for each of the 6 samples. distrsGSE37704 is a list with the 6 corresponding elements. The estimated distributions for HiSeq data were very similar, hence these distributions can be used as defaults for Illumina MiSeq and HiSeq experiments.

Usage

data(distrsGSE37704)

Format

An list with 6 elements of class readDistrs. See help(getDistrs) and help(readDistrs-class) for details.

Examples

data(distrsGSE37704)
distrsGSE37704
plot(distrsGSE37704[[1]],'readSt')
lines(distrsGSE37704[[2]], 'readSt', col=2)
plot(distrsGSE37704[[1]],'fragLength')

casper documentation built on Dec. 17, 2020, 2:01 a.m.