BitSeq: Transcript expression inference and differential expression analysis for RNA-seq data

The BitSeq package is targeted for transcript expression analysis and differential expression analysis of RNA-seq data in two stage process. In the first stage it uses Bayesian inference methodology to infer expression of individual transcripts from individual RNA-seq experiments. The second stage of BitSeq embraces the differential expression analysis of transcript expression. Providing expression estimates from replicates of multiple conditions, Log-Normal model of the estimates is used for inferring the condition mean transcript expression and ranking the transcripts based on the likelihood of differential expression.

AuthorPeter Glaus, Antti Honkela and Magnus Rattray
Date of publicationNone
MaintainerAntti Honkela <antti.honkela@hiit.fi>, Panagiotis Papastamoulis <panagiotis.papastamoulis@manchester.ac.uk>
LicenseArtistic-2.0 + file LICENSE
Version1.18.0

View on Bioconductor

Files in this package

BitSeq/DESCRIPTION
BitSeq/LICENSE
BitSeq/NAMESPACE
BitSeq/R
BitSeq/R/estimateDE_call.R BitSeq/R/estimateExpression_call.R BitSeq/R/estimateHyperPar_call.R BitSeq/R/estimateVBExpression_call.R BitSeq/R/getDE.R BitSeq/R/getExpression.R BitSeq/R/getGeneExpression_call.R BitSeq/R/getMeanVariance_call.R BitSeq/R/getWithinGeneExpression_call.R BitSeq/R/methods.R BitSeq/R/parseAlignment_call.R BitSeq/R/tri_methods.R
BitSeq/build
BitSeq/build/vignette.rds
BitSeq/cleanup
BitSeq/configure
BitSeq/configure.ac
BitSeq/inst
BitSeq/inst/CITATION
BitSeq/inst/NEWS
BitSeq/inst/doc
BitSeq/inst/doc/BitSeq.R
BitSeq/inst/doc/BitSeq.Rnw
BitSeq/inst/doc/BitSeq.pdf
BitSeq/inst/extdata
BitSeq/inst/extdata/data-c0b0.sam
BitSeq/inst/extdata/data-c0b1.rpkm
BitSeq/inst/extdata/data-c1b0.rpkm
BitSeq/inst/extdata/data-c1b1.rpkm
BitSeq/inst/extdata/ensSelect1.fasta
BitSeq/inst/extdata/ensSelect1.tr
BitSeq/inst/extdata/parameters1.txt
BitSeq/man
BitSeq/man/BitSeq-package.Rd BitSeq/man/estimateDE.Rd BitSeq/man/estimateExpression.Rd BitSeq/man/estimateHyperPar.Rd BitSeq/man/estimateVBExpression.Rd BitSeq/man/getDE.Rd BitSeq/man/getExpression.Rd BitSeq/man/getGeneExpression.Rd BitSeq/man/getMeanVariance.Rd BitSeq/man/loadSamples.Rd BitSeq/man/parseAlignment.Rd BitSeq/man/transcriptInfo.Rd BitSeq/man/transcriptInfoFile.Rd
BitSeq/src
BitSeq/src/ArgumentParser.cpp
BitSeq/src/ArgumentParser.h
BitSeq/src/CollapsedSampler.cpp
BitSeq/src/CollapsedSampler.h
BitSeq/src/FileHeader.cpp
BitSeq/src/FileHeader.h
BitSeq/src/GibbsParameters.cpp
BitSeq/src/GibbsParameters.h
BitSeq/src/GibbsSampler.cpp
BitSeq/src/GibbsSampler.h
BitSeq/src/Makevars.common
BitSeq/src/Makevars.in
BitSeq/src/Makevars.win
BitSeq/src/Makevars.win.in
BitSeq/src/MyTimer.cpp
BitSeq/src/MyTimer.h
BitSeq/src/PosteriorSamples.cpp
BitSeq/src/PosteriorSamples.h
BitSeq/src/R_init_BitSeq.cpp
BitSeq/src/ReadDistribution.cpp
BitSeq/src/ReadDistribution.h
BitSeq/src/Sampler.cpp
BitSeq/src/Sampler.h
BitSeq/src/SimpleSparse.cpp
BitSeq/src/SimpleSparse.h
BitSeq/src/TagAlignments.cpp
BitSeq/src/TagAlignments.h
BitSeq/src/TranscriptExpression.cpp
BitSeq/src/TranscriptExpression.h
BitSeq/src/TranscriptInfo.cpp
BitSeq/src/TranscriptInfo.h
BitSeq/src/TranscriptSequence.cpp
BitSeq/src/TranscriptSequence.h
BitSeq/src/VariationalBayes.cpp
BitSeq/src/VariationalBayes.h
BitSeq/src/asa103
BitSeq/src/asa103/LICENSE.txt
BitSeq/src/asa103/asa103.hpp
BitSeq/src/boost
BitSeq/src/boost/LICENSE_1_0.txt
BitSeq/src/boost/README
BitSeq/src/boost/assert.hpp
BitSeq/src/boost/config
BitSeq/src/boost/config.hpp
BitSeq/src/boost/config/abi
BitSeq/src/boost/config/abi/borland_prefix.hpp
BitSeq/src/boost/config/abi/borland_suffix.hpp
BitSeq/src/boost/config/abi/msvc_prefix.hpp
BitSeq/src/boost/config/abi/msvc_suffix.hpp
BitSeq/src/boost/config/abi_prefix.hpp
BitSeq/src/boost/config/abi_suffix.hpp
BitSeq/src/boost/config/auto_link.hpp
BitSeq/src/boost/config/compiler
BitSeq/src/boost/config/compiler/borland.hpp
BitSeq/src/boost/config/compiler/clang.hpp
BitSeq/src/boost/config/compiler/codegear.hpp
BitSeq/src/boost/config/compiler/comeau.hpp
BitSeq/src/boost/config/compiler/common_edg.hpp
BitSeq/src/boost/config/compiler/compaq_cxx.hpp
BitSeq/src/boost/config/compiler/cray.hpp
BitSeq/src/boost/config/compiler/digitalmars.hpp
BitSeq/src/boost/config/compiler/gcc.hpp
BitSeq/src/boost/config/compiler/gcc_xml.hpp
BitSeq/src/boost/config/compiler/greenhills.hpp
BitSeq/src/boost/config/compiler/hp_acc.hpp
BitSeq/src/boost/config/compiler/intel.hpp
BitSeq/src/boost/config/compiler/kai.hpp
BitSeq/src/boost/config/compiler/metrowerks.hpp
BitSeq/src/boost/config/compiler/mpw.hpp
BitSeq/src/boost/config/compiler/nvcc.hpp
BitSeq/src/boost/config/compiler/pathscale.hpp
BitSeq/src/boost/config/compiler/pgi.hpp
BitSeq/src/boost/config/compiler/sgi_mipspro.hpp
BitSeq/src/boost/config/compiler/sunpro_cc.hpp
BitSeq/src/boost/config/compiler/vacpp.hpp
BitSeq/src/boost/config/compiler/visualc.hpp
BitSeq/src/boost/config/no_tr1
BitSeq/src/boost/config/no_tr1/cmath.hpp
BitSeq/src/boost/config/no_tr1/complex.hpp
BitSeq/src/boost/config/no_tr1/functional.hpp
BitSeq/src/boost/config/no_tr1/memory.hpp
BitSeq/src/boost/config/no_tr1/utility.hpp
BitSeq/src/boost/config/platform
BitSeq/src/boost/config/platform/aix.hpp
BitSeq/src/boost/config/platform/amigaos.hpp
BitSeq/src/boost/config/platform/beos.hpp
BitSeq/src/boost/config/platform/bsd.hpp
BitSeq/src/boost/config/platform/cray.hpp
BitSeq/src/boost/config/platform/cygwin.hpp
BitSeq/src/boost/config/platform/hpux.hpp
BitSeq/src/boost/config/platform/irix.hpp
BitSeq/src/boost/config/platform/linux.hpp
BitSeq/src/boost/config/platform/macos.hpp
BitSeq/src/boost/config/platform/qnxnto.hpp
BitSeq/src/boost/config/platform/solaris.hpp
BitSeq/src/boost/config/platform/symbian.hpp
BitSeq/src/boost/config/platform/vms.hpp
BitSeq/src/boost/config/platform/vxworks.hpp
BitSeq/src/boost/config/platform/win32.hpp
BitSeq/src/boost/config/posix_features.hpp
BitSeq/src/boost/config/requires_threads.hpp
BitSeq/src/boost/config/select_compiler_config.hpp
BitSeq/src/boost/config/select_platform_config.hpp
BitSeq/src/boost/config/select_stdlib_config.hpp
BitSeq/src/boost/config/stdlib
BitSeq/src/boost/config/stdlib/dinkumware.hpp
BitSeq/src/boost/config/stdlib/libcomo.hpp
BitSeq/src/boost/config/stdlib/libcpp.hpp
BitSeq/src/boost/config/stdlib/libstdcpp3.hpp
BitSeq/src/boost/config/stdlib/modena.hpp
BitSeq/src/boost/config/stdlib/msl.hpp
BitSeq/src/boost/config/stdlib/roguewave.hpp
BitSeq/src/boost/config/stdlib/sgi.hpp
BitSeq/src/boost/config/stdlib/stlport.hpp
BitSeq/src/boost/config/stdlib/vacpp.hpp
BitSeq/src/boost/config/suffix.hpp
BitSeq/src/boost/config/user.hpp
BitSeq/src/boost/config/warning_disable.hpp
BitSeq/src/boost/cstdint.hpp
BitSeq/src/boost/current_function.hpp
BitSeq/src/boost/detail
BitSeq/src/boost/detail/endian.hpp
BitSeq/src/boost/detail/limits.hpp
BitSeq/src/boost/detail/workaround.hpp
BitSeq/src/boost/integer
BitSeq/src/boost/integer.hpp
BitSeq/src/boost/integer/integer_mask.hpp
BitSeq/src/boost/integer/static_log2.hpp
BitSeq/src/boost/integer_fwd.hpp
BitSeq/src/boost/integer_traits.hpp
BitSeq/src/boost/limits.hpp
BitSeq/src/boost/mpl
BitSeq/src/boost/mpl/aux_
BitSeq/src/boost/mpl/aux_/adl_barrier.hpp
BitSeq/src/boost/mpl/aux_/arity.hpp
BitSeq/src/boost/mpl/aux_/config
BitSeq/src/boost/mpl/aux_/config/adl.hpp
BitSeq/src/boost/mpl/aux_/config/arrays.hpp
BitSeq/src/boost/mpl/aux_/config/ctps.hpp
BitSeq/src/boost/mpl/aux_/config/dtp.hpp
BitSeq/src/boost/mpl/aux_/config/eti.hpp
BitSeq/src/boost/mpl/aux_/config/gcc.hpp
BitSeq/src/boost/mpl/aux_/config/integral.hpp
BitSeq/src/boost/mpl/aux_/config/intel.hpp
BitSeq/src/boost/mpl/aux_/config/lambda.hpp
BitSeq/src/boost/mpl/aux_/config/msvc.hpp
BitSeq/src/boost/mpl/aux_/config/nttp.hpp
BitSeq/src/boost/mpl/aux_/config/overload_resolution.hpp
BitSeq/src/boost/mpl/aux_/config/preprocessor.hpp
BitSeq/src/boost/mpl/aux_/config/static_constant.hpp
BitSeq/src/boost/mpl/aux_/config/ttp.hpp
BitSeq/src/boost/mpl/aux_/config/workaround.hpp
BitSeq/src/boost/mpl/aux_/integral_wrapper.hpp
BitSeq/src/boost/mpl/aux_/lambda_arity_param.hpp
BitSeq/src/boost/mpl/aux_/lambda_support.hpp
BitSeq/src/boost/mpl/aux_/na.hpp
BitSeq/src/boost/mpl/aux_/na_fwd.hpp
BitSeq/src/boost/mpl/aux_/na_spec.hpp
BitSeq/src/boost/mpl/aux_/nttp_decl.hpp
BitSeq/src/boost/mpl/aux_/preprocessor
BitSeq/src/boost/mpl/aux_/preprocessor/def_params_tail.hpp
BitSeq/src/boost/mpl/aux_/preprocessor/enum.hpp
BitSeq/src/boost/mpl/aux_/preprocessor/filter_params.hpp
BitSeq/src/boost/mpl/aux_/preprocessor/params.hpp
BitSeq/src/boost/mpl/aux_/preprocessor/sub.hpp
BitSeq/src/boost/mpl/aux_/preprocessor/tuple.hpp
BitSeq/src/boost/mpl/aux_/static_cast.hpp
BitSeq/src/boost/mpl/aux_/template_arity_fwd.hpp
BitSeq/src/boost/mpl/aux_/value_wknd.hpp
BitSeq/src/boost/mpl/aux_/yes_no.hpp
BitSeq/src/boost/mpl/bool.hpp
BitSeq/src/boost/mpl/bool_fwd.hpp
BitSeq/src/boost/mpl/if.hpp
BitSeq/src/boost/mpl/int.hpp
BitSeq/src/boost/mpl/int_fwd.hpp
BitSeq/src/boost/mpl/integral_c.hpp
BitSeq/src/boost/mpl/integral_c_fwd.hpp
BitSeq/src/boost/mpl/integral_c_tag.hpp
BitSeq/src/boost/mpl/lambda_fwd.hpp
BitSeq/src/boost/mpl/limits
BitSeq/src/boost/mpl/limits/arity.hpp
BitSeq/src/boost/mpl/void_fwd.hpp
BitSeq/src/boost/non_type.hpp
BitSeq/src/boost/pending
BitSeq/src/boost/pending/integer_log2.hpp
BitSeq/src/boost/preprocessor
BitSeq/src/boost/preprocessor/arithmetic
BitSeq/src/boost/preprocessor/arithmetic/add.hpp
BitSeq/src/boost/preprocessor/arithmetic/dec.hpp
BitSeq/src/boost/preprocessor/arithmetic/inc.hpp
BitSeq/src/boost/preprocessor/arithmetic/sub.hpp
BitSeq/src/boost/preprocessor/array
BitSeq/src/boost/preprocessor/array/data.hpp
BitSeq/src/boost/preprocessor/array/elem.hpp
BitSeq/src/boost/preprocessor/array/size.hpp
BitSeq/src/boost/preprocessor/cat.hpp
BitSeq/src/boost/preprocessor/comma_if.hpp
BitSeq/src/boost/preprocessor/config
BitSeq/src/boost/preprocessor/config/config.hpp
BitSeq/src/boost/preprocessor/control
BitSeq/src/boost/preprocessor/control/detail
BitSeq/src/boost/preprocessor/control/detail/dmc
BitSeq/src/boost/preprocessor/control/detail/dmc/while.hpp
BitSeq/src/boost/preprocessor/control/detail/edg
BitSeq/src/boost/preprocessor/control/detail/edg/while.hpp
BitSeq/src/boost/preprocessor/control/detail/msvc
BitSeq/src/boost/preprocessor/control/detail/msvc/while.hpp
BitSeq/src/boost/preprocessor/control/detail/while.hpp
BitSeq/src/boost/preprocessor/control/expr_iif.hpp
BitSeq/src/boost/preprocessor/control/if.hpp
BitSeq/src/boost/preprocessor/control/iif.hpp
BitSeq/src/boost/preprocessor/control/while.hpp
BitSeq/src/boost/preprocessor/debug
BitSeq/src/boost/preprocessor/debug/error.hpp
BitSeq/src/boost/preprocessor/detail
BitSeq/src/boost/preprocessor/detail/auto_rec.hpp
BitSeq/src/boost/preprocessor/detail/check.hpp
BitSeq/src/boost/preprocessor/detail/dmc
BitSeq/src/boost/preprocessor/detail/dmc/auto_rec.hpp
BitSeq/src/boost/preprocessor/detail/is_binary.hpp
BitSeq/src/boost/preprocessor/empty.hpp
BitSeq/src/boost/preprocessor/enum_params.hpp
BitSeq/src/boost/preprocessor/facilities
BitSeq/src/boost/preprocessor/facilities/empty.hpp
BitSeq/src/boost/preprocessor/facilities/identity.hpp
BitSeq/src/boost/preprocessor/facilities/overload.hpp
BitSeq/src/boost/preprocessor/identity.hpp
BitSeq/src/boost/preprocessor/inc.hpp
BitSeq/src/boost/preprocessor/iterate.hpp
BitSeq/src/boost/preprocessor/iteration
BitSeq/src/boost/preprocessor/iteration/detail
BitSeq/src/boost/preprocessor/iteration/detail/bounds
BitSeq/src/boost/preprocessor/iteration/detail/bounds/lower1.hpp
BitSeq/src/boost/preprocessor/iteration/detail/bounds/lower2.hpp
BitSeq/src/boost/preprocessor/iteration/detail/bounds/lower3.hpp
BitSeq/src/boost/preprocessor/iteration/detail/bounds/lower4.hpp
BitSeq/src/boost/preprocessor/iteration/detail/bounds/lower5.hpp
BitSeq/src/boost/preprocessor/iteration/detail/bounds/upper1.hpp
BitSeq/src/boost/preprocessor/iteration/detail/bounds/upper2.hpp
BitSeq/src/boost/preprocessor/iteration/detail/bounds/upper3.hpp
BitSeq/src/boost/preprocessor/iteration/detail/bounds/upper4.hpp
BitSeq/src/boost/preprocessor/iteration/detail/bounds/upper5.hpp
BitSeq/src/boost/preprocessor/iteration/detail/finish.hpp
BitSeq/src/boost/preprocessor/iteration/detail/iter
BitSeq/src/boost/preprocessor/iteration/detail/iter/forward1.hpp
BitSeq/src/boost/preprocessor/iteration/detail/iter/forward2.hpp
BitSeq/src/boost/preprocessor/iteration/detail/iter/forward3.hpp
BitSeq/src/boost/preprocessor/iteration/detail/iter/forward4.hpp
BitSeq/src/boost/preprocessor/iteration/detail/iter/forward5.hpp
BitSeq/src/boost/preprocessor/iteration/detail/iter/reverse1.hpp
BitSeq/src/boost/preprocessor/iteration/detail/iter/reverse2.hpp
BitSeq/src/boost/preprocessor/iteration/detail/iter/reverse3.hpp
BitSeq/src/boost/preprocessor/iteration/detail/iter/reverse4.hpp
BitSeq/src/boost/preprocessor/iteration/detail/iter/reverse5.hpp
BitSeq/src/boost/preprocessor/iteration/detail/local.hpp
BitSeq/src/boost/preprocessor/iteration/detail/rlocal.hpp
BitSeq/src/boost/preprocessor/iteration/detail/self.hpp
BitSeq/src/boost/preprocessor/iteration/detail/start.hpp
BitSeq/src/boost/preprocessor/iteration/iterate.hpp
BitSeq/src/boost/preprocessor/iteration/local.hpp
BitSeq/src/boost/preprocessor/iteration/self.hpp
BitSeq/src/boost/preprocessor/list
BitSeq/src/boost/preprocessor/list/adt.hpp
BitSeq/src/boost/preprocessor/list/detail
BitSeq/src/boost/preprocessor/list/detail/dmc
BitSeq/src/boost/preprocessor/list/detail/dmc/fold_left.hpp
BitSeq/src/boost/preprocessor/list/detail/edg
BitSeq/src/boost/preprocessor/list/detail/edg/fold_left.hpp
BitSeq/src/boost/preprocessor/list/detail/edg/fold_right.hpp
BitSeq/src/boost/preprocessor/list/detail/fold_left.hpp
BitSeq/src/boost/preprocessor/list/detail/fold_right.hpp
BitSeq/src/boost/preprocessor/list/fold_left.hpp
BitSeq/src/boost/preprocessor/list/fold_right.hpp
BitSeq/src/boost/preprocessor/list/for_each_i.hpp
BitSeq/src/boost/preprocessor/list/reverse.hpp
BitSeq/src/boost/preprocessor/logical
BitSeq/src/boost/preprocessor/logical/and.hpp
BitSeq/src/boost/preprocessor/logical/bitand.hpp
BitSeq/src/boost/preprocessor/logical/bool.hpp
BitSeq/src/boost/preprocessor/logical/compl.hpp
BitSeq/src/boost/preprocessor/punctuation
BitSeq/src/boost/preprocessor/punctuation/comma.hpp
BitSeq/src/boost/preprocessor/punctuation/comma_if.hpp
BitSeq/src/boost/preprocessor/repeat.hpp
BitSeq/src/boost/preprocessor/repetition
BitSeq/src/boost/preprocessor/repetition/detail
BitSeq/src/boost/preprocessor/repetition/detail/dmc
BitSeq/src/boost/preprocessor/repetition/detail/dmc/for.hpp
BitSeq/src/boost/preprocessor/repetition/detail/edg
BitSeq/src/boost/preprocessor/repetition/detail/edg/for.hpp
BitSeq/src/boost/preprocessor/repetition/detail/for.hpp
BitSeq/src/boost/preprocessor/repetition/detail/msvc
BitSeq/src/boost/preprocessor/repetition/detail/msvc/for.hpp
BitSeq/src/boost/preprocessor/repetition/enum_params.hpp
BitSeq/src/boost/preprocessor/repetition/for.hpp
BitSeq/src/boost/preprocessor/repetition/repeat.hpp
BitSeq/src/boost/preprocessor/slot
BitSeq/src/boost/preprocessor/slot/detail
BitSeq/src/boost/preprocessor/slot/detail/counter.hpp
BitSeq/src/boost/preprocessor/slot/detail/def.hpp
BitSeq/src/boost/preprocessor/slot/detail/shared.hpp
BitSeq/src/boost/preprocessor/slot/detail/slot1.hpp
BitSeq/src/boost/preprocessor/slot/detail/slot2.hpp
BitSeq/src/boost/preprocessor/slot/detail/slot3.hpp
BitSeq/src/boost/preprocessor/slot/detail/slot4.hpp
BitSeq/src/boost/preprocessor/slot/detail/slot5.hpp
BitSeq/src/boost/preprocessor/slot/slot.hpp
BitSeq/src/boost/preprocessor/tuple
BitSeq/src/boost/preprocessor/tuple/eat.hpp
BitSeq/src/boost/preprocessor/tuple/elem.hpp
BitSeq/src/boost/preprocessor/tuple/rem.hpp
BitSeq/src/boost/preprocessor/tuple/to_list.hpp
BitSeq/src/boost/preprocessor/variadic
BitSeq/src/boost/preprocessor/variadic/elem.hpp
BitSeq/src/boost/preprocessor/variadic/size.hpp
BitSeq/src/boost/random
BitSeq/src/boost/random/detail
BitSeq/src/boost/random/detail/config.hpp
BitSeq/src/boost/random/detail/const_mod.hpp
BitSeq/src/boost/random/detail/disable_warnings.hpp
BitSeq/src/boost/random/detail/enable_warnings.hpp
BitSeq/src/boost/random/detail/generator_bits.hpp
BitSeq/src/boost/random/detail/generator_seed_seq.hpp
BitSeq/src/boost/random/detail/integer_log2.hpp
BitSeq/src/boost/random/detail/large_arithmetic.hpp
BitSeq/src/boost/random/detail/operators.hpp
BitSeq/src/boost/random/detail/ptr_helper.hpp
BitSeq/src/boost/random/detail/seed.hpp
BitSeq/src/boost/random/detail/seed_impl.hpp
BitSeq/src/boost/random/detail/signed_unsigned_tools.hpp
BitSeq/src/boost/random/exponential_distribution.hpp
BitSeq/src/boost/random/gamma_distribution.hpp
BitSeq/src/boost/random/mersenne_twister.hpp
BitSeq/src/boost/random/normal_distribution.hpp
BitSeq/src/boost/random/uniform_01.hpp
BitSeq/src/boost/static_assert.hpp
BitSeq/src/boost/type.hpp
BitSeq/src/boost/type_traits
BitSeq/src/boost/type_traits/add_const.hpp
BitSeq/src/boost/type_traits/add_lvalue_reference.hpp
BitSeq/src/boost/type_traits/add_reference.hpp
BitSeq/src/boost/type_traits/add_rvalue_reference.hpp
BitSeq/src/boost/type_traits/add_volatile.hpp
BitSeq/src/boost/type_traits/broken_compiler_spec.hpp
BitSeq/src/boost/type_traits/config.hpp
BitSeq/src/boost/type_traits/detail
BitSeq/src/boost/type_traits/detail/bool_trait_def.hpp
BitSeq/src/boost/type_traits/detail/bool_trait_undef.hpp
BitSeq/src/boost/type_traits/detail/cv_traits_impl.hpp
BitSeq/src/boost/type_traits/detail/false_result.hpp
BitSeq/src/boost/type_traits/detail/ice_and.hpp
BitSeq/src/boost/type_traits/detail/ice_eq.hpp
BitSeq/src/boost/type_traits/detail/ice_not.hpp
BitSeq/src/boost/type_traits/detail/ice_or.hpp
BitSeq/src/boost/type_traits/detail/is_function_ptr_helper.hpp
BitSeq/src/boost/type_traits/detail/is_function_ptr_tester.hpp
BitSeq/src/boost/type_traits/detail/is_mem_fun_pointer_impl.hpp
BitSeq/src/boost/type_traits/detail/is_mem_fun_pointer_tester.hpp
BitSeq/src/boost/type_traits/detail/template_arity_spec.hpp
BitSeq/src/boost/type_traits/detail/type_trait_def.hpp
BitSeq/src/boost/type_traits/detail/type_trait_undef.hpp
BitSeq/src/boost/type_traits/detail/wrap.hpp
BitSeq/src/boost/type_traits/detail/yes_no_type.hpp
BitSeq/src/boost/type_traits/ice.hpp
BitSeq/src/boost/type_traits/integral_constant.hpp
BitSeq/src/boost/type_traits/intrinsics.hpp
BitSeq/src/boost/type_traits/is_abstract.hpp
BitSeq/src/boost/type_traits/is_arithmetic.hpp
BitSeq/src/boost/type_traits/is_array.hpp
BitSeq/src/boost/type_traits/is_class.hpp
BitSeq/src/boost/type_traits/is_const.hpp
BitSeq/src/boost/type_traits/is_convertible.hpp
BitSeq/src/boost/type_traits/is_enum.hpp
BitSeq/src/boost/type_traits/is_float.hpp
BitSeq/src/boost/type_traits/is_function.hpp
BitSeq/src/boost/type_traits/is_integral.hpp
BitSeq/src/boost/type_traits/is_lvalue_reference.hpp
BitSeq/src/boost/type_traits/is_member_function_pointer.hpp
BitSeq/src/boost/type_traits/is_member_pointer.hpp
BitSeq/src/boost/type_traits/is_pointer.hpp
BitSeq/src/boost/type_traits/is_polymorphic.hpp
BitSeq/src/boost/type_traits/is_reference.hpp
BitSeq/src/boost/type_traits/is_rvalue_reference.hpp
BitSeq/src/boost/type_traits/is_same.hpp
BitSeq/src/boost/type_traits/is_scalar.hpp
BitSeq/src/boost/type_traits/is_signed.hpp
BitSeq/src/boost/type_traits/is_union.hpp
BitSeq/src/boost/type_traits/is_unsigned.hpp
BitSeq/src/boost/type_traits/is_void.hpp
BitSeq/src/boost/type_traits/is_volatile.hpp
BitSeq/src/boost/type_traits/make_unsigned.hpp
BitSeq/src/boost/type_traits/msvc
BitSeq/src/boost/type_traits/msvc/remove_bounds.hpp
BitSeq/src/boost/type_traits/msvc/remove_cv.hpp
BitSeq/src/boost/type_traits/msvc/remove_reference.hpp
BitSeq/src/boost/type_traits/msvc/typeof.hpp
BitSeq/src/boost/type_traits/remove_bounds.hpp
BitSeq/src/boost/type_traits/remove_cv.hpp
BitSeq/src/boost/type_traits/remove_reference.hpp
BitSeq/src/boost/utility
BitSeq/src/boost/utility/enable_if.hpp
BitSeq/src/boost/version.hpp
BitSeq/src/common.cpp
BitSeq/src/common.h
BitSeq/src/estimateDE.cpp
BitSeq/src/estimateExpression.cpp
BitSeq/src/estimateHyperPar.cpp
BitSeq/src/estimateVBExpression.cpp
BitSeq/src/getGeneExpression.cpp
BitSeq/src/getVariance.cpp
BitSeq/src/getWithinGeneExpression.cpp
BitSeq/src/lowess.cpp
BitSeq/src/lowess.h
BitSeq/src/misc.cpp
BitSeq/src/misc.h
BitSeq/src/parseAlignment.cpp
BitSeq/src/transposeFiles.cpp
BitSeq/src/transposeFiles.h
BitSeq/vignettes
BitSeq/vignettes/BitSeq.Rnw

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