ccmap: Combination Connectivity Mapping

Finds drugs and drug combinations that are predicted to reverse or mimic gene expression signatures. These drugs might reverse diseases or mimic healthy lifestyles.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("ccmap")
AuthorAlex Pickering
Bioconductor views DifferentialExpression GeneExpression Microarray Transcription
Date of publicationNone
MaintainerAlex Pickering <alexvpickering@gmail.com>
LicenseMIT + file LICENSE
Version1.2.0

View on Bioconductor

Files

DESCRIPTION
LICENSE
NAMESPACE
R
R/predict_combos.R R/query_combos.R R/query_drugs.R R/query_utils.R
README.md
build
build/vignette.rds
inst
inst/doc
inst/doc/ccmap-vignette.R
inst/doc/ccmap-vignette.Rmd
inst/doc/ccmap-vignette.html
man
man/get_dprimes.Rd man/query_combos.Rd man/query_drugs.Rd man/sum_rowcolCumsum.Rd
tests
tests/testthat
tests/testthat.R tests/testthat/test-all.R
vignettes
vignettes/accuracy.png
vignettes/ccmap-vignette.Rmd
vignettes/meta-vs-cons.png

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.