jhammelman/spatzie: Identification of enriched motif pairs from chromatin interaction data
Identifies motifs that are significantly co-enriched from enhancer-promoter interaction data. While enhancer-promoter annotation is commonly used to define groups of interaction anchors, spatzie also supports co-enrichment analysis between preprocessed interaction anchors. Supports BEDPE interaction data derived from genome-wide assays such as HiC, ChIA-PET, and HiChIP. Can also be used to look for differentially enriched motif pairs between two interaction experiments.
Getting started
Browse package contents
Package details |
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| Bioconductor views | Classification DNA3DStructure Epigenetics FunctionalGenomics GeneRegulation HiC PeakDetection Transcription |
| Maintainer | |
| License | GPL-3 |
| Version | 1.9.0 |
| URL | https://spatzie.mit.edu |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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