haibol2016/InPAS: A Bioconductor package for identifying novel Alternative PolyAdenylation Sites (PAS) from RNA-seq data

Alternative polyadenylation (APA) is one of the important post- transcriptional regulation mechanisms which occurs in most human genes. InPAS facilitates the discovery of novel APA sites and the differential usage of APA sites from RNA-Seq data. It leverages cleanUpdTSeq to fine tune identified APA sites by removing false sites.

Getting started

Package details

Bioconductor views AlternativeSplicing Coverage DifferentialSplicing GeneRegulation ImmunoOncology RNASeq Sequencing Transcription
MaintainerJianhong Ou <jianhong.ou@duke.edu>
LicenseGPL (>= 2)
Version2.0.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("haibol2016/InPAS")
haibol2016/InPAS documentation built on March 26, 2021, 12:05 a.m.