InPAS: A package for identifying novel Alternative PolyAdenylation...
In haibol2016/InPAS: Identify Novel Alternative PolyAdenylation Sites (PAS) from RNA-seq data
InPAS R Documentation
A package for identifying novel Alternative PolyAdenylation
Sites (PAS) based on RNA-seq data
Description
The InPAS package provides three categories of important functions:
parse_TxDb, extract_UTR3Anno, get_ssRleCov, assemble_allCov,
get_UTR3eSet, test_dPDUI, run_singleSampleAnalysis,
run_singleGroupAnalysis, run_limmaAnalysis, filter_testOut,
get_usage4plot, setup_GSEA, run_coverageQC
functions for retrieving 3' UTR annotation
parse_TxDb,
extract_UTR3Anno, get_lastCDSUTR3
functions for processing read coverage data
assemble_allCov,
get_ssRleCov, run_coverageQC, setup_parCPsSearch
functions for alternative polyadenylation site analysis
test_dPDUI, run_singleSampleAnalysis, run_singleGroupAnalysis,
run_limmaAnalysis, filter_testOut, get_usage4plot
haibol2016/InPAS documentation built on March 30, 2022, 10:30 a.m.
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| InPAS | R Documentation |
A package for identifying novel Alternative PolyAdenylation Sites (PAS) based on RNA-seq data
Description
The InPAS package provides three categories of important functions: parse_TxDb, extract_UTR3Anno, get_ssRleCov, assemble_allCov, get_UTR3eSet, test_dPDUI, run_singleSampleAnalysis, run_singleGroupAnalysis, run_limmaAnalysis, filter_testOut, get_usage4plot, setup_GSEA, run_coverageQC
functions for retrieving 3' UTR annotation
parse_TxDb, extract_UTR3Anno, get_lastCDSUTR3
functions for processing read coverage data
assemble_allCov, get_ssRleCov, run_coverageQC, setup_parCPsSearch
functions for alternative polyadenylation site analysis
test_dPDUI, run_singleSampleAnalysis, run_singleGroupAnalysis, run_limmaAnalysis, filter_testOut, get_usage4plot
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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