plot_utr3Usage: Visualize the dPDUI events using ggplot2

In haibol2016/InPAS: Identify Novel Alternative PolyAdenylation Sites (PAS) from RNA-seq data

Visualize the dPDUI events using ggplot2

Description

Visualize the dPDUI events by plotting the MSE, and total coverage per group along 3' UTR regions with dPDUI using ggplot2::geom_line ().

Usage

plot_utr3Usage(usage_data, vline_color = "purple", vline_type = "dashed")

Arguments

usage_data	An object of GenomicRanges::GRanges, an output from get_usage4plot().
vline_color	color for vertical line showing position of predicated proximal CP site. Default, purple.
vline_type	line type for vertical line showing position of predicated proximal CP site. Default, dashed. See ggplot2 linetype.

Value

A ggplot object for refined plotting

Author(s)

Haibo Liu

See Also

For example, see get_usage4plot().

haibol2016/InPAS documentation built on March 30, 2022, 10:30 a.m.