get_depthWeight: Calculate the depth weight for each sample or each...

In haibol2016/InPAS: Identify Novel Alternative PolyAdenylation Sites (PAS) from RNA-seq data

Calculate the depth weight for each sample or each experimental condition

Description

Calculate the depth weight for each sample of non-hugeData or each experimental condition for hugeData: depth/mean(depth)

Usage

get_depthWeight(metadata, hugeData)

Arguments

metadata	A data frame containing the metadata for a RNA-seq experiment, which can be extract from the SQLite database set up by setup_sqlitedb()
hugeData	A logical(1), indicating whether it is huge data

Value

A named numeric vector containing depth weight for each sample for non-hugeData, or depth weight for each condition if hugeData.

Author(s)

Jianhong Ou, Haibo Liu

haibol2016/InPAS documentation built on March 30, 2022, 10:30 a.m.