icetea: Integrating Cap Enrichment with Transcript Expression Analysis

icetea (Integrating Cap Enrichment with Transcript Expression Analysis) provides functions for end-to-end analysis of multiple 5'-profiling methods such as CAGE, RAMPAGE and MAPCap, beginning from raw reads to detection of transcription start sites using replicates. It also allows performing differential TSS detection between group of samples, therefore, integrating the mRNA cap enrichment information with transcript expression analysis.

Package details

AuthorVivek Bhardwaj [aut, cre]
Bioconductor views DifferentialExpression GeneExpression ImmunoOncology RNASeq Sequencing Transcription Transcriptomics
MaintainerVivek Bhardwaj <>
LicenseGPL-3 + file LICENSE
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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icetea documentation built on Nov. 8, 2020, 6:57 p.m.