exportTSS: Export the detected TSS from CapSet object as .bed files

In icetea: Integrating Cap Enrichment with Transcript Expression Analysis

Description

Export the detected TSS from CapSet object as .bed files

Usage

exportTSS(CSobject, outfile_prefix, pergroup = FALSE, merged = TRUE)

## S4 method for signature 'CapSet'
exportTSS(CSobject, outfile_prefix, pergroup = FALSE, merged = TRUE)

Arguments

CSobject	The modified CapSet object after running detectTSS function
outfile_prefix	Prefix (with path) for output .bed files
pergroup	If TRUE, write output per group of samples
merged	If TRUE, write merged bed file (union of all groups)

Value

.bed file(s) containing detected TSS.

Examples

# load a previously saved CapSet object
cs <- exampleCSobject()
# export tss
exportTSS(cs, merged = TRUE, outfile_prefix = "testTSS")

icetea documentation built on Nov. 8, 2020, 6:57 p.m.