getChromWindows: Get chromosome sliding windows from BAM files
In icetea: Integrating Cap Enrichment with Transcript Expression Analysis
Description
Usage
Arguments
Value
Description
Get chromosome sliding windows from BAM files
Usage
1
getChromWindows(bamFiles, restrictChr = NULL, binSize, stepSize)
Arguments
bamFiles
Character vector (bam files)
restrictChr
Chromosomes to select
binSize
Size of bins
stepSize
Size of window slide
Value
GRanges (sliding windows) for both strands
icetea documentation built on Nov. 8, 2020, 6:57 p.m.
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Description Usage Arguments Value
Description
Get chromosome sliding windows from BAM files
Usage
1 | getChromWindows(bamFiles, restrictChr = NULL, binSize, stepSize)
|
Arguments
bamFiles |
Character vector (bam files) |
restrictChr |
Chromosomes to select |
binSize |
Size of bins |
stepSize |
Size of window slide |
Value
GRanges (sliding windows) for both strands
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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