diffQCplots: Make DESeq2 or edgeR QC plots

In icetea: Integrating Cap Enrichment with Transcript Expression Analysis

Description

Make DESeq2 or edgeR QC plots

Usage

diffQCplots(method, fit, y, designMat)

Arguments

method	one of "DESeq2" or "edgeR"
fit	output of fitDiffTSS (if method = "edgeR")
y	output of fitDiffTSS (if method = "DESeq2")
designMat	design matrix (data frame)

Value

Sparsity, dispersion and PCA plot (if method = DESeq2), BCV, dispersion and MDS plot (if method = "edgeR")

icetea documentation built on Nov. 8, 2020, 6:57 p.m.