filterDups: Filter PCR-duplicates from BAM file using internal UMIs
In icetea: Integrating Cap Enrichment with Transcript Expression Analysis
Description
Usage
Arguments
Value
View source: R/filterDuplicates.R
Description
Filter PCR-duplicates from BAM file using internal UMIs
Usage
1
filterDups(bamFile, outFile, keepPairs)
Arguments
bamFile
character. Input BAM file
outFile
character. Output (filtered) BAM file
keepPairs
logical. Keep R2 read?
Value
Filtered BAM file, after PCR duplicate removal
icetea documentation built on Nov. 8, 2020, 6:57 p.m.
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Description Usage Arguments Value
View source: R/filterDuplicates.R
Description
Filter PCR-duplicates from BAM file using internal UMIs
Usage
1 | filterDups(bamFile, outFile, keepPairs)
|
Arguments
bamFile |
character. Input BAM file |
outFile |
character. Output (filtered) BAM file |
keepPairs |
logical. Keep R2 read? |
Value
Filtered BAM file, after PCR duplicate removal
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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