splitBAM_byRepindex: Split the composite BAM file using replicate indexes (MAPCap...
In icetea: Integrating Cap Enrichment with Transcript Expression Analysis
Description
Usage
Arguments
Value
Examples
View source: R/splitBAM_byRepindex.R
Description
Split the composite BAM file using replicate indexes (MAPCap data)
Usage
1
splitBAM_byRepindex(bamFile, outfile_prefix, ncores = 1)
Arguments
bamFile
character. Path to a mapped BAM file
outfile_prefix
character. prefix for output file (replicates IDs will be added as RR/YY)
ncores
integer. Number of cores to use for parallel processing
Value
Filtered files by replicate Index
Examples
1
2
bam <- system.file("extdata", "bam/embryo1.bam", package = "icetea")
splitBAM_byRepindex(bamFile = bam, outfile_prefix = "testSplit", ncores = 1)
icetea documentation built on Nov. 8, 2020, 6:57 p.m.
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Description Usage Arguments Value Examples
View source: R/splitBAM_byRepindex.R
Description
Split the composite BAM file using replicate indexes (MAPCap data)
Usage
1 | splitBAM_byRepindex(bamFile, outfile_prefix, ncores = 1)
|
Arguments
bamFile |
character. Path to a mapped BAM file |
outfile_prefix |
character. prefix for output file (replicates IDs will be added as RR/YY) |
ncores |
integer. Number of cores to use for parallel processing |
Value
Filtered files by replicate Index
Examples
1 2 | bam <- system.file("extdata", "bam/embryo1.bam", package = "icetea")
splitBAM_byRepindex(bamFile = bam, outfile_prefix = "testSplit", ncores = 1)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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