strandBinCounts: Perform stranded Bin counts
In icetea: Integrating Cap Enrichment with Transcript Expression Analysis
Description
Usage
Arguments
Value
Description
Perform stranded Bin counts
Usage
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strandBinCounts(
bam.files,
restrictChrs,
bam_param,
bp_param,
window_size,
sliding = FALSE,
func
)
Arguments
bam.files
character vector. BAM files to use
restrictChrs
character vector. chromosomes to use
bam_param
ScanBAMParams
bp_param
BPPARAM
window_size
integer. size of window to use
sliding
logical. perform sliding window counts?
func
function to preprocess reads
Value
RangedSE object with forward and reverse strand counts
icetea documentation built on Nov. 8, 2020, 6:57 p.m.
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Description Usage Arguments Value
Description
Perform stranded Bin counts
Usage
1 2 3 4 5 6 7 8 9 | strandBinCounts(
bam.files,
restrictChrs,
bam_param,
bp_param,
window_size,
sliding = FALSE,
func
)
|
Arguments
bam.files |
character vector. BAM files to use |
restrictChrs |
character vector. chromosomes to use |
bam_param |
ScanBAMParams |
bp_param |
BPPARAM |
window_size |
integer. size of window to use |
sliding |
logical. perform sliding window counts? |
func |
function to preprocess reads |
Value
RangedSE object with forward and reverse strand counts
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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