numReadsInBed: Count the number of reads in a given GRanges
In icetea: Integrating Cap Enrichment with Transcript Expression Analysis
Description
Usage
Arguments
Value
Description
Count the number of reads in a given GRanges
Usage
1
numReadsInBed(regions, bams = NA, countall = FALSE)
Arguments
regions
The GRanges object to count reads in.
bams
character. path to bam files from where the reads have to be counted
countall
logical. whether to keep both reads of paired-end data
Value
Total counts within given ranges per BAM file.
icetea documentation built on Nov. 8, 2020, 6:57 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Count the number of reads in a given GRanges
Usage
1 | numReadsInBed(regions, bams = NA, countall = FALSE)
|
Arguments
regions |
The GRanges object to count reads in. |
bams |
character. path to bam files from where the reads have to be counted |
countall |
logical. whether to keep both reads of paired-end data |
Value
Total counts within given ranges per BAM file.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.