split_fastq: Split paired-end fastq by barcodes

Description Usage Arguments Value

View source: R/demultiplexFASTQ.R

Description

Split paired-end fastq by barcodes

Usage

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split_fastq(
  expType,
  idx_name,
  outfile_R1,
  outfile_R2,
  fastq_R1,
  fastq_R2,
  max_mismatch
)

Arguments

expType

character. experiment type (RAMPAGE, MAPCap or CAGE)

idx_name

character. barcode ID

outfile_R1

character. output fastq file : Read 1

outfile_R2

character. output fastq file : Read 2

fastq_R1

character. input fastq file : Read 1

fastq_R2

character. input fastq file : Read 2

max_mismatch

integer. max allowed mismatches

Value

kept reads corresponding to each barcode.


icetea documentation built on Nov. 8, 2020, 6:57 p.m.