TransView: Read density map construction and accession. Visualization of ChIPSeq and RNASeq data sets

This package provides efficient tools to generate, access and display read densities of sequencing based data sets such as from RNA-Seq and ChIP-Seq.

AuthorJulius Muller
Date of publicationNone
MaintainerJulius Muller <ju-mu@alumni.ethz.ch>
LicenseGPL-3
Version1.18.0
http://bioconductor.org/packages/release/bioc/html/TransView.html

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Files in this package

TransView/.Rinstignore
TransView/DESCRIPTION
TransView/NAMESPACE
TransView/NEWS
TransView/R
TransView/R/TransView_AllClasses.R TransView/R/TransView_AllGenerics.R TransView/R/TransView_accessors.R TransView/R/TransView_parseReads.R TransView/R/TransView_plotTV.R TransView/R/TransView_plotTVData.R TransView/R/TransView_setter.R TransView/R/TransView_show.R TransView/R/TransView_slice.R TransView/R/TransView_sliceT.R TransView/R/TransView_tools.R TransView/R/test_TransView_package.R TransView/R/zzz.R
TransView/build
TransView/build/vignette.rds
TransView/inst
TransView/inst/doc
TransView/inst/doc/TransView.R
TransView/inst/doc/TransView.Rnw
TransView/inst/doc/TransView.pdf
TransView/inst/extdata
TransView/inst/extdata/dm3_chr4.gtf.gz
TransView/inst/extdata/example_ctrl_sam.bam
TransView/inst/extdata/example_mm9.gtf.gz
TransView/inst/extdata/example_sam.bam
TransView/inst/extdata/test.sam
TransView/inst/extdata/test_macs.xls
TransView/inst/unitTests
TransView/inst/unitTests/test_parseReads.R
TransView/inst/unitTests/test_slice.R
TransView/man
TransView/man/DensityContainer-class.Rd TransView/man/TVResults-class.Rd TransView/man/TransView-package.Rd TransView/man/annotatePeaks.Rd TransView/man/gtf2gr.Rd TransView/man/histogram-methods.Rd TransView/man/macs2gr.Rd TransView/man/meltPeak.Rd TransView/man/parseReads.Rd TransView/man/peak2tss.Rd TransView/man/plotTV.Rd TransView/man/plotTVData.Rd TransView/man/rmTV.Rd TransView/man/slice1.Rd TransView/man/slice1T.Rd TransView/man/tvStats-methods.Rd
TransView/src
TransView/src/Makevars
TransView/src/Makevars.win
TransView/src/R_init_TransView.c
TransView/src/bin_density.c
TransView/src/bin_density.h
TransView/src/construct_dc.c
TransView/src/construct_dc.h
TransView/src/parse_sam.c
TransView/src/parse_sam.h
TransView/src/slice_dc.c
TransView/src/slice_dc.h
TransView/src/visuals.c
TransView/src/visuals.h
TransView/tests
TransView/tests/TransView_unit_tests.R
TransView/vignettes
TransView/vignettes/TransView.Rnw
TransView/vignettes/example_induced_top1k.png

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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