Man pages for TransView
Read density map construction and accession. Visualization of ChIPSeq and RNASeq data sets
| annotatePeaks | Associates peaks to TSS |
| DensityContainer-class | Class '"DensityContainer"' |
| gtf2gr | GTF file parsing |
| histogram-methods | Histogram of the read distribution |
| macs2gr | Convenience function for MACS output conversion |
| meltPeak | Convenience function which returns a data frame with... |
| parseReads | User configurable efficient assembly of read density maps |
| peak2tss | Changes the peak center to the next TSS according to previous... |
| plotTV | Plot and cluster global read densities |
| plotTVData | Summarize plotTV results |
| rmTV | Free space occupied by DensityContainer |
| slice1 | Slice read densities from a TransView dataset |
| slice1T | Slice read densities of whole transcripts from a TransView... |
| TransView-package | Read density map construction and accession. Visualization of... |
| TVResults-class | Class '"TVResults"' |
| tvStats-methods | DensityContainer accessor function |
