histogram-methods: Histogram of the read distribution

In TransView: Read density map construction and accession. Visualization of ChIPSeq and RNASeq data sets

Description

Retrieves the histogram computed by the parseReads function

Usage

## S4 method for signature 'DensityContainer'
histogram(dc)

Arguments

dc	An object of class DensityContainer.

Details

The histogram is computed by taking the running average within a window of window size as specified by the argument hwindow to the function parseReads(). The histogram is only counting local reads within the read density maps and outside of gaps or outside of possible range filters that might be in place.

Value

Returns a numeric vector with the histogram in 1Bp resolution starting from 0.

Author(s)

Julius Muller [e-mail]

TransView documentation built on Nov. 8, 2020, 5:31 p.m.