Files in TransView

Read density map construction and accession. Visualization of ChIPSeq and RNASeq data sets

.Rinstignore

NEWS

NAMESPACE

DESCRIPTION

build/vignette.rds

src/parse_sam.c

src/visuals.h

src/slice_dc.c

src/bam_plbuf.c

src/bin_density.h

src/Makevars

src/R_init_TransView.c

src/slice_dc.h

src/sam.c

src/parse_sam.h

src/bin_density.c

src/construct_dc.h

src/visuals.c

src/construct_dc.c

R/TransView_AllGenerics.R R/TransView_plotTV.R R/TransView_accessors.R R/test_TransView_package.R R/TransView_sliceT.R R/TransView_AllClasses.R R/TransView_plotTVData.R R/zzz.R R/TransView_setter.R R/TransView_slice.R R/TransView_parseReads.R R/TransView_tools.R R/TransView_show.R

vignettes/example_induced_top1k.png

vignettes/TransView.Rnw

man/peak2tss.Rd man/histogram-methods.Rd man/plotTV.Rd man/slice1.Rd man/rmTV.Rd man/parseReads.Rd man/TransView-package.Rd man/plotTVData.Rd man/TVResults-class.Rd man/meltPeak.Rd man/macs2gr.Rd man/slice1T.Rd man/annotatePeaks.Rd man/tvStats-methods.Rd man/gtf2gr.Rd man/DensityContainer-class.Rd tests/TransView_unit_tests.R inst/doc/TransView.R

inst/doc/TransView.Rnw

inst/doc/TransView.pdf

inst/extdata/dm3_chr4.gtf.gz

inst/extdata/test.sam

inst/extdata/example_sam.bam

inst/extdata/example_ctrl_sam.bam

inst/extdata/test_macs.xls

inst/extdata/example_mm9.gtf.gz

inst/unitTests/test_slice.R inst/unitTests/test_parseReads.R

TransView documentation built on Nov. 8, 2020, 5:31 p.m.