TVResults-class: Class '"TVResults"'

In TransView: Read density map construction and accession. Visualization of ChIPSeq and RNASeq data sets

Description

Container holding the results of a call to plotTV().

Objects from the Class

Objects are created by the function plotTV() using an internal constructor.

Accessors

tvr represents a "TVResults" instance in the following

parameters(tvr):

Holds all parameters used to call plotTV

clusters(tvr):

Returns numeric vector with the clsuter of each cluster.

cluster_order(tvr):

Ordering of the rows within the original regions passed to plotTV with regard to the clusters.

scores_peaks(tvr):

Scores of the peaks. Corresponds to the values within the plot after interpolation and normalization.

scores_rna(tvr):

Scores of the transcripts. Corresponds to the values within the plot after interpolation and normalization.

summaryTV(tvr):

Returns a data frame with the clustering results of the internal data.

Convenience Methods

plotTVData

signature(tvr = "TVResults"): Returns a data frame with summarized clustering results.

Note

Not all slots are currently being exported.

Author(s)

Julius Muller [e-mail]

See Also

plotTVData-methods

Examples

showClass("TVResults")

TransView documentation built on Nov. 8, 2020, 5:31 p.m.