les: Identifying Differential Effects in Tiling Microarray Data

The 'les' package estimates Loci of Enhanced Significance (LES) in tiling microarray data. These are regions of regulation such as found in differential transcription, CHiP-chip, or DNA modification analysis. The package provides a universal framework suitable for identifying differential effects in tiling microarray data sets, and is independent of the underlying statistics at the level of single probes.

AuthorJulian Gehring, Clemens Kreutz, Jens Timmer
Date of publicationNone
MaintainerJulian Gehring <jg-bioc@gmx.com>
LicenseGPL-3
Version1.24.0

View on Bioconductor

Functions

calcSingle Man page
cdfDuplicates Man page
checkState Man page
chi2 Man page
chi2,Les-method Man page
chi2-methods Man page
ci Man page
ci,Les Man page
ci,Les-method Man page
ci-methods Man page
epWeight Man page
estimate Man page
estimate,Les-method Man page
estimate-methods Man page
export Man page
export,Les Man page
export,Les-method Man page
export-methods Man page
exprs Man page
fitGsri Man page
gaussWeight Man page
ind2log Man page
itLinReg Man page
les Man page
Les Man page
Les,ANY,numeric-method Man page
Les-class Man page
les-internal Man page
[<-,Les-method Man page
[,Les-method Man page
Les-methods Man page
les-package Man page
log2ind Man page
mcsapply Man page
modGrenander Man page
plot Man page
plot,Les Man page
plot,Les-method Man page
plot-methods Man page
pos Man page
pval Man page
qrSlope Man page
rectangWeight Man page
reference Man page
regions Man page
regions,Les Man page
regions,Les-method Man page
regions-methods Man page
seFast Man page
seSlopeWeight Man page
setState Man page
show,Les-method Man page
slopeWeight Man page
summary,Les-method Man page
threshold Man page
threshold,Les Man page
threshold,Les-method Man page
threshold-methods Man page
triangWeight Man page
wcdf2 Man page
weighting Man page

Files

les/DESCRIPTION
les/LICENSE
les/NAMESPACE
les/NEWS
les/R
les/R/allClasses.R les/R/allExportedFunctions.R les/R/allGeneric.R les/R/allInternal.R les/R/allMethods.R
les/build
les/build/vignette.rds
les/data
les/data/spikeInData.RData
les/data/spikeInStat.RData
les/inst
les/inst/doc
les/inst/doc/les.R
les/inst/doc/les.Rnw
les/inst/doc/les.pdf
les/man
les/man/Les-class.Rd les/man/Les.Rd les/man/chi2.Rd les/man/ci.Rd les/man/estimate.Rd les/man/export.Rd les/man/les-internal.Rd les/man/les-package.Rd les/man/plot.Rd les/man/regions.Rd les/man/spikeInData.Rd les/man/spikeInStat.Rd les/man/threshold.Rd les/man/weighting.Rd
les/vignettes
les/vignettes/les.Rnw
les/vignettes/ref_les.bib

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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