les: Identifying Differential Effects in Tiling Microarray Data

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The 'les' package estimates Loci of Enhanced Significance (LES) in tiling microarray data. These are regions of regulation such as found in differential transcription, CHiP-chip, or DNA modification analysis. The package provides a universal framework suitable for identifying differential effects in tiling microarray data sets, and is independent of the underlying statistics at the level of single probes.

Author
Julian Gehring, Clemens Kreutz, Jens Timmer
Date of publication
None
Maintainer
Julian Gehring <jg-bioc@gmx.com>
License
GPL-3
Version
1.24.0

View on Bioconductor

Man pages

chi2
chi2
ci
ci
estimate
estimate
export
export
Les
Les
Les-class
Class 'Les'
les-internal
Internal functions of the 'les' package.
les-package
Identifying Differential Effects in Tiling Microarray Data
plot
plot method for class Les
regions
regions
spikeInData
Spike-in ChIP-chip data set
spikeInStat
Spike-in ChIP-chip data set
threshold
threshold
weighting
Weighting functions

Files in this package

les/DESCRIPTION
les/LICENSE
les/NAMESPACE
les/NEWS
les/R
les/R/allClasses.R
les/R/allExportedFunctions.R
les/R/allGeneric.R
les/R/allInternal.R
les/R/allMethods.R
les/build
les/build/vignette.rds
les/data
les/data/spikeInData.RData
les/data/spikeInStat.RData
les/inst
les/inst/doc
les/inst/doc/les.R
les/inst/doc/les.Rnw
les/inst/doc/les.pdf
les/man
les/man/Les-class.Rd
les/man/Les.Rd
les/man/chi2.Rd
les/man/ci.Rd
les/man/estimate.Rd
les/man/export.Rd
les/man/les-internal.Rd
les/man/les-package.Rd
les/man/plot.Rd
les/man/regions.Rd
les/man/spikeInData.Rd
les/man/spikeInStat.Rd
les/man/threshold.Rd
les/man/weighting.Rd
les/vignettes
les/vignettes/les.Rnw
les/vignettes/ref_les.bib