Biocview "ChIPchip"

ChIPpeakAnno

Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments or any experiments resulted in large number of chromosome ranges

LihuaJulieZhu/ChIPpeakAnno

Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments or any experiments resulted in large number of chromosome ranges

jianhong/ChIPpeakAnno

Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments, or any experiments that result in large number of genomic interval data

iChip

Bayesian Modeling of ChIP-chip Data Through Hidden Ising Models

ChIPXpress

ChIPXpress: enhanced transcription factor target gene identification from ChIP-seq and ChIP-chip data using publicly available gene expression profiles

metygl/ChIPXpress

ChIPXpress: enhanced transcription factor target gene identification from ChIP-seq and ChIP-chip data using publicly available gene expression profiles

chroGPS

chroGPS2: Generation, visualization and differential analysis of epigenome maps

sevenC

Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs

ibn-salem/sevenC

Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs

ibn-salem/chromloop

Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs

CharlesJB/mpiGadem

de novo motif discovery

rGADEM

de novo motif discovery

minhanho/MotifFunc

Functionality Visualization for Motifs

les

Identifying Differential Effects in Tiling Microarray Data

MotIV

Motif Identification and Validation

alyst/MotIV

Motif Identification and Validation

motifStack

Plot stacked logos for single or multiple DNA, RNA and amino acid sequence

jianhong/motifStack

Plot stacked logos for single or multiple DNA, RNA and amino acid sequence

Starr

Simple tiling array analysis of Affymetrix ChIP-chip data