ChIPXpress: ChIPXpress: enhanced transcription factor target gene identification from ChIP-seq and ChIP-chip data using publicly available gene expression profiles

ChIPXpress takes as input predicted TF bound genes from ChIPx data and uses a corresponding database of gene expression profiles downloaded from NCBI GEO to rank the TF bound targets in order of which gene is most likely to be functional TF target.

AuthorGeorge Wu
Date of publicationNone
MaintainerGeorge Wu <gewu@jhsph.edu>
LicenseGPL(>=2)
Version1.16.0

View on Bioconductor

Files in this package

ChIPXpress/.BBSoptions
ChIPXpress/DESCRIPTION
ChIPXpress/NAMESPACE
ChIPXpress/R
ChIPXpress/R/ChIPXpress.R ChIPXpress/R/buildDatabase.R ChIPXpress/R/cleanDatabase.R
ChIPXpress/build
ChIPXpress/build/vignette.rds
ChIPXpress/data
ChIPXpress/data/Oct4ESC_ChIPgenes.rda
ChIPXpress/inst
ChIPXpress/inst/doc
ChIPXpress/inst/doc/ChIPXpress.R
ChIPXpress/inst/doc/ChIPXpress.Rnw
ChIPXpress/inst/doc/ChIPXpress.pdf
ChIPXpress/inst/unitTests
ChIPXpress/inst/unitTests/test_all.R
ChIPXpress/man
ChIPXpress/man/ChIPXpress-package.Rd ChIPXpress/man/ChIPXpress.Rd ChIPXpress/man/Oct4ESC_ChIPgenes.Rd ChIPXpress/man/buildDatabase.Rd ChIPXpress/man/cleanDatabase.Rd
ChIPXpress/tests
ChIPXpress/tests/runTests.R
ChIPXpress/vignettes
ChIPXpress/vignettes/ChIPXpress.Rnw

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