iChip: Bayesian Modeling of ChIP-chip Data Through Hidden Ising Models
Version 1.30.0

This package uses hidden Ising models to identify enriched genomic regions in ChIP-chip data. It can be used to analyze the data from multiple platforms (e.g., Affymetrix, Agilent, and NimbleGen), and the data with single to multiple replicates.

AuthorQianxing Mo
Bioconductor views AgilentChip ChIPchip Microarray OneChannel
Date of publicationNone
MaintainerQianxing Mo <qmo@bcm.edu>
LicenseGPL (>= 2)
Version1.30.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("iChip")

Popular man pages

enrichreg: Call and merge enriched probes to enriched regions.
iChip2: Bayesian modeling of ChIP-chip data through hidden Ising...
lmtstat: A wrapper function used to calculated the limma t-statistics
oct4: Oct4 data
p53: p53 data
iChip1: Bayesian modeling of ChIP-chip data through hidden Ising...
See all...

All man pages Function index File listing

Man pages

enrichreg: Call and merge enriched probes to enriched regions.
iChip1: Bayesian modeling of ChIP-chip data through hidden Ising...
iChip2: Bayesian modeling of ChIP-chip data through hidden Ising...
lmtstat: A wrapper function used to calculated the limma t-statistics
oct4: Oct4 data
p53: p53 data

Functions

Files

DESCRIPTION
NAMESPACE
R
R/iChip.R
build
build/vignette.rds
data
data/oct4.rda
data/p53.rda
demo
demo/00Index
demo/iChipdemo.R
inst
inst/doc
inst/doc/iChip.R
inst/doc/iChip.Rnw
inst/doc/iChip.pdf
man
man/enrichreg.Rd
man/iChip1.Rd
man/iChip2.Rd
man/lmtstat.Rd
man/oct4.Rd
man/p53.Rd
src
src/iChip.c
vignettes
vignettes/iChip.Rnw
iChip documentation built on May 20, 2017, 9:56 p.m.

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