iChip: Bayesian Modeling of ChIP-chip Data Through Hidden Ising Models

This package uses hidden Ising models to identify enriched genomic regions in ChIP-chip data. It can be used to analyze the data from multiple platforms (e.g., Affymetrix, Agilent, and NimbleGen), and the data with single to multiple replicates.

AuthorQianxing Mo
Date of publicationNone
MaintainerQianxing Mo <qmo@bcm.edu>
LicenseGPL (>= 2)
Version1.28.0

View on Bioconductor

Files

iChip/DESCRIPTION
iChip/NAMESPACE
iChip/R
iChip/R/iChip.R
iChip/build
iChip/build/vignette.rds
iChip/data
iChip/data/oct4.rda
iChip/data/p53.rda
iChip/demo
iChip/demo/00Index
iChip/demo/iChipdemo.R
iChip/inst
iChip/inst/doc
iChip/inst/doc/iChip.R
iChip/inst/doc/iChip.Rnw
iChip/inst/doc/iChip.pdf
iChip/man
iChip/man/enrichreg.Rd iChip/man/iChip1.Rd iChip/man/iChip2.Rd iChip/man/lmtstat.Rd iChip/man/oct4.Rd iChip/man/p53.Rd
iChip/src
iChip/src/iChip.c
iChip/vignettes
iChip/vignettes/iChip.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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