FertigLab/ATACCoGAPS: Analysis Tools for scATACseq Data with CoGAPS

Provides tools for running the CoGAPS algorithm (Fertig et al, 2010) on single-cell ATAC sequencing data and analysis of the results. Can be used to perform analyses at the level of genes, motifs, TFs, or pathways. Additionally provides tools for transfer learning and data integration with single-cell RNA sequencing data.

Getting started

Package details

Bioconductor views Bayesian Clustering DimensionReduction Epigenetics ResearchField SingleCell Software Transcription
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
FertigLab/ATACCoGAPS documentation built on Feb. 8, 2023, 6:46 p.m.