API for FertigLab/ATACCoGAPS
Analysis Tools for scATACseq Data with CoGAPS

Global functions
ATACTransferLearning Man page Source code
RNAseqTFValidation Man page Source code
applyGREAT Man page Source code
cgapsPlot Man page Source code
dataSubsetBySparsity Man page Source code
exampleMotifList Man page
findOverlap Source code
findRegulatoryNetworks Man page Source code
foldAccessibility Man page Source code
geneAccessibility Man page Source code
geneMatch Source code
genePatternMatch Man page Source code
geneRanges Source code
getTFDescriptions Man page Source code
getTFs Man page Source code
heatmapGeneAccessibility Man page Source code
heatmapPatternMarkers Man page Source code
heatmapPatternMatrix Man page Source code
motifPatternMatch Man page Source code
motifSummarization Man page Source code
paths Source code
pathwayMatch Man page Source code
patternAccessibleMotifs Source code
patternMarkerCellClassifier Man page Source code
peaksToGRanges Man page Source code
schepCellTypes Man page
schepCogapsResult Man page
schepGranges Man page
schepPeaks Man page
simpleMotifTFMatch Man page Source code
subsetSchepData Man page
tfData Man page
FertigLab/ATACCoGAPS documentation built on June 29, 2022, 4:13 p.m.