Package which provides tools for processing and analysis of single-cell ATAC-seq data with the Bayesian Non-Negative Matrix Factorization algorithm, CoGAPS, as described in our Nucleic Acids Research paper

Install ATACCoGAPS with:

if (!require("BiocManager", quietly = TRUE))

A tutorial demonstrating the standard analysis pipeline for ATACCoGAPS using data from Schep et al, 2017 can be found here:

FertigLab/ATACCoGAPS documentation built on Feb. 8, 2023, 6:46 p.m.