For single cell RNA-seq data collected from more than one subject (e.g. biological sample or technical replicates), this package contains tools to summarize single cell gene expression profiles at the level of subject. A SingleCellExperiment object is taken as input and converted to a list of SummarizedExperiment objects, where each list element corresponds to an assigned cell type. The SummarizedExperiment objects contain aggregate gene-by-subject count matrices and inter-subject column metadata for individual subjects that can be processed using downstream bulk RNA-seq tools.
|Author||Jason Ratcliff [aut, cre] (<https://orcid.org/0000-0001-7079-334X>), Andrew Thurman [aut], Michael Chimenti [ctb], Alejandro Pezzulo [ctb]|
|Bioconductor views||DifferentialExpression GeneExpression RNASeq SingleCell Software Transcription Transcriptomics|
|Maintainer||Jason Ratcliff <email@example.com>|
|Package repository||View on Bioconductor|
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