BrainImageR is a package that provides the user with information of where in the human brain their gene set corresponds to. This is provided both as a continuous variable and as a easily-interpretable image. BrainImageR has additional functionality of identifying approximately when in developmental time that a gene expression dataset corresponds to. Both the spatial gene set enrichment and the developmental time point prediction are assessed in comparison to the Allen Brain Atlas reference data.
|Author||Sara Linker [aut, cre]|
|Bioconductor views||GeneExpression GenePrediction GeneSetEnrichment Software Transcription|
|Maintainer||Sara B Linker <[email protected]>|
|License||CC BY-SA 4.0|
|Package repository||View on GitHub|
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