available_areanames: List of areas that are present in a plotted brain slice

In saralinker/brainImageR: A Framework for visualizing gene set enrichment throughout neurodevelopment

Description

provides all brain areas within a slice for a refset.

Usage

available_areanames(composite, slice = NULL)

Arguments

composite	Object from either SpatialEnrichment or CreateBrain
slice	Section of the brain to be queried

Value

all areas present in the brain section of interest

Examples

#brainImageR:::loadworkspace()
##Load in a gene set
data(vth)
##calculate spatial enrichment
#composite <- SpatialEnrichment(vth, reps = 20, refset = "developing")
#available_areanames(composite, slice = 5)

saralinker/brainImageR documentation built on May 29, 2019, 1:51 p.m.