SpatialEnrichment: Calculate the presence of your gene set within each brain...

Description Usage Arguments Value Examples

View source: R/SpatialEnrichment.R

Description

Calculates the presence of gene set within each region

Usage

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SpatialEnrichment(genes, background = NULL, reps = 10,
  refset = c("developing", "adult"))

Arguments

genes

query gene set

background

background gene list, default = NULL (uses all ABA genes)

reps

replicates for bootstrap, default = 10

refset

reference brain map. developing (default) or adult

Value

"Comp" object

Examples

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#brainImageR:::loadworkspace()
##First load in a gene set
data(vth)
##Then calculate the spatial enrichment
#composite <- SpatialEnrichment(vth,20,"developing")

saralinker/brainImageR documentation built on May 29, 2019, 1:51 p.m.