yycunc/SMNN: SMNN: Batch Effect Correction for Single-cell RNA-seq data with Supervised Mutual Nearest Neighbor Detection
This function SMNNcorrect is designed to perform supervised batch effect correction for scRNA-seq data by first identifying nearest neighbors (NNs) within corresponding clusters (or cell types) and then leveraging information from these NNs.
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Package details |
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| Author | c(person("Yuchen", "Yang", email = "yyuchen@email.unc.edu", role = c("aut", "cre")), person("Gang", "Li", email = "franklee@live.unc.edu", role = c("aut")), person("Huijun", "Qian", email = "hjqian@live.unc.edu", role = c("aut")), person("Yun", "Li", email = "yunli@med.unc.edu", role = c("aut"))) |
| Bioconductor views | GUI RNASeq SingleCell Software Transcription Transcriptomics |
| Maintainer | Yuchen Yang <yyuchen@email.unc.edu> |
| License | GPL-3 |
| Version | 1.2.1 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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