brainImageR: A Framework for visualizing gene set enrichment throughout neurodevelopment

BrainImageR is a package that provides the user with information of where in the human brain their gene set corresponds to. This is provided both as a continuous variable and as a easily-interpretable image. BrainImageR has additional functionality of identifying approximately when in developmental time that a gene expression dataset corresponds to. Both the spatial gene set enrichment and the developmental time point prediction are assessed in comparison to the Allen Brain Atlas reference data.

Package details

AuthorSara Linker [aut, cre]
Bioconductor views GeneExpression GenePrediction GeneSetEnrichment Software Transcription
MaintainerSara B Linker <[email protected]>
LicenseCC BY-SA 4.0
Version1.0.0
URL https://github.com/saralinker/brainImageR
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("brainImageR")

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brainImageR documentation built on Nov. 1, 2018, 5:02 a.m.