GetGenes: GenGenes
In brainImageR: A Framework for visualizing gene set enrichment throughout neurodevelopment
Description
Usage
Arguments
Value
Examples
Description
GetGenes returns the genes that are expressed within a given tissue
Usage
1
Arguments
genes
Query gene list.
composite
Result from SpatialEnrichment
tissue_abrev
The tissue of interest.
Value
Gene overlap between query and tissue of interest
Examples
1
2
3
4
5
6
7
8
#brainImageR:::loadworkspace()
##First put together a gene list, or load in the default vth dataset
data(vth)
##Calculate the spatial enrichment.
#composite <- SpatialEnrichment(vth, reps = 20, refset = "developing")
##Ask which genes are present in any given tissue.
#available_areanames(composite, slice = 4)
#vth_in_VZ <- GetGenes(vth, composite, tissue_abrev = "VZ")
brainImageR documentation built on May 6, 2019, 3:54 a.m.
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Description Usage Arguments Value Examples
Description
GetGenes returns the genes that are expressed within a given tissue
Usage
1 |
Arguments
genes |
Query gene list. |
composite |
Result from SpatialEnrichment |
tissue_abrev |
The tissue of interest. |
Value
Gene overlap between query and tissue of interest
Examples
1 2 3 4 5 6 7 8 | #brainImageR:::loadworkspace()
##First put together a gene list, or load in the default vth dataset
data(vth)
##Calculate the spatial enrichment.
#composite <- SpatialEnrichment(vth, reps = 20, refset = "developing")
##Ask which genes are present in any given tissue.
#available_areanames(composite, slice = 4)
#vth_in_VZ <- GetGenes(vth, composite, tissue_abrev = "VZ")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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