transcriptogramer: Transcriptional analysis based on transcriptograms

R package for transcriptional analysis based on transcriptograms, a method to analyze transcriptomes that projects expression values on a set of ordered proteins, arranged such that the probability that gene products participate in the same metabolic pathway exponentially decreases with the increase of the distance between two proteins of the ordering. Transcriptograms are, hence, genome wide gene expression profiles that provide a global view for the cellular metabolism, while indicating gene sets whose expression are altered.

Package details

AuthorDiego Morais [aut, cre], Rodrigo Dalmolin [aut]
Bioconductor views Clustering DifferentialExpression GeneExpression GeneSetEnrichment GraphAndNetwork ImmunoOncology Microarray Network RNASeq Software SystemsBiology Transcription Visualization
MaintainerDiego Morais <>
LicenseGPL (>= 2)
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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transcriptogramer documentation built on Nov. 8, 2020, 8:17 p.m.