connectivityProperties-method: Calculates average graph properties as function of node...
In transcriptogramer: Transcriptional analysis based on transcriptograms
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
Calculates network properties as function of node connectivity/degree (k),
such as: probability of a protein of the graph has degree k, average
assortativity of the nodes of degree k, and the average clustering
coefficient of the nodes of degree k.
Usage
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connectivityProperties(object)
## S4 method for signature 'Transcriptogram'
connectivityProperties(object)
Arguments
object
An object of class Transcriptogram.
Details
The assortativity of a node can be measured by the average degree of its
neighbors.
Value
This method returns a data.frame containing: unique degrees (k) of
the nodes of the graph,
probability (pk) of a node of the graph has degree k, average assortativity
(ak) of the nodes of degree
k, and the average clustering coefficient (ck) of the nodes of degree k.
Author(s)
Diego Morais
See Also
transcriptogramPreprocess,
Hs900,
association
Examples
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transcriptogram <- transcriptogramPreprocess(association, Hs900)
## Not run:
cProperties <- connectivityProperties(transcriptogram)
## End(Not run)
transcriptogramer documentation built on Nov. 8, 2020, 8:17 p.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
Description
Calculates network properties as function of node connectivity/degree (k), such as: probability of a protein of the graph has degree k, average assortativity of the nodes of degree k, and the average clustering coefficient of the nodes of degree k.
Usage
1 2 3 4 | connectivityProperties(object)
## S4 method for signature 'Transcriptogram'
connectivityProperties(object)
|
Arguments
object |
An object of class Transcriptogram. |
Details
The assortativity of a node can be measured by the average degree of its neighbors.
Value
This method returns a data.frame containing: unique degrees (k) of the nodes of the graph, probability (pk) of a node of the graph has degree k, average assortativity (ak) of the nodes of degree k, and the average clustering coefficient (ck) of the nodes of degree k.
Author(s)
Diego Morais
See Also
transcriptogramPreprocess, Hs900, association
Examples
1 2 3 4 5 | transcriptogram <- transcriptogramPreprocess(association, Hs900)
## Not run:
cProperties <- connectivityProperties(transcriptogram)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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