Description Usage Arguments Details Value Author(s) See Also Examples

Calculates network properties as function of node connectivity/degree (k), such as: probability of a protein of the graph has degree k, average assortativity of the nodes of degree k, and the average clustering coefficient of the nodes of degree k.

1 2 3 4 | ```
connectivityProperties(object)
## S4 method for signature 'Transcriptogram'
connectivityProperties(object)
``` |

`object` |
An object of class Transcriptogram. |

The assortativity of a node can be measured by the average degree of its neighbors.

This method returns a data.frame containing: unique degrees (k) of the nodes of the graph, probability (pk) of a node of the graph has degree k, average assortativity (ak) of the nodes of degree k, and the average clustering coefficient (ck) of the nodes of degree k.

Diego Morais

transcriptogramPreprocess, Hs900, association

1 2 3 4 5 | ```
transcriptogram <- transcriptogramPreprocess(association, Hs900)
## Not run:
cProperties <- connectivityProperties(transcriptogram)
## End(Not run)
``` |

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