Man pages for transcriptogramer
Transcriptional analysis based on transcriptograms

associationAssociation
clusterEnrichment-methodTerm enrichment
clusterVisualization-methodDisplays graphs of the differentially expressed clusters
connectivityProperties-methodCalculates average graph properties as function of node...
DE-methodGet DE
DEsymbolsDictionary Protein2Symbol
differentiallyExpressed-methodIdentify which genes are differentially expressed
enrichmentPlot-methodProjects Gene Ontology terms on the ordering
GPL570Dictionary Protein2Probe
GSE9988Dataset containing expression values
Hs700Ordered Homo sapiens proteins of combined score greater than...
Hs800Ordered Homo sapiens proteins of combined score greater than...
Hs900Ordered Homo sapiens proteins of combined score greater than...
HsBPTermsDictionary Protein2GO
Mm700Ordered Mus musculus proteins of combined score greater than...
Mm800Ordered Mus musculus proteins of combined score greater than...
Mm900Ordered Mus musculus proteins of combined score greater than...
orderingProperties-methodCalculates graph properties projected on the ordered proteins
radius-methodRadius
Rn700Ordered Rattus norvegicus proteins of combined score greater...
Rn800Ordered Rattus norvegicus proteins of combined score greater...
Rn900Ordered Rattus norvegicus proteins of combined score greater...
Sc700Ordered Saccharomyces cerevisiae proteins of combined score...
Sc800Ordered Saccharomyces cerevisiae proteins of combined score...
Sc900Ordered Saccharomyces cerevisiae proteins of combined score...
Terms-methodGet terms
Transcriptogram-classClass Transcriptogram
transcriptogramer-packageTranscriptional analysis based on transcriptograms
transcriptogramPreprocessCreates an object of class Transcriptogram
transcriptogramStep1-methodCalculates the average of the expression values related to...
transcriptogramStep2-methodCalculates the average of the expression values using a...
transcriptogramer documentation built on Nov. 30, 2018, 6:04 p.m.