Description Usage Arguments Value Author(s) See Also Examples
View source: R/AllConstructors.R
Constructor for the Transcriptogram object.
1 | transcriptogramPreprocess(association, ordering, radius = 0L)
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association |
A matrix, or data.frame, containing two columns of ENSEMBL Peptide IDs (character); or the path for a file containing two columns, no header, with rows composed by the ENSEMBL Peptide IDs of two proteins that are connected. |
ordering |
A character vector containing ordered ENSEMBL Peptide IDs; a data.frame containing two columns, the first one with ENSEMBL Peptide IDs (character), and the second containing its respective position (non-negative integer); or the path for a file containing two columns, a row for the headers, with rows composed respectively by a ENSEMBL Peptide ID and its respective position. |
radius |
An non-negative integer referring to the window radius required for some methods. |
A preprocessed object of class Transcriptogram.
Diego Morais
Transcriptogram-class, association, Hs900
1 | transcriptogram <- transcriptogramPreprocess(association, Hs900)
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