transcriptogramPreprocess: Creates an object of class Transcriptogram

Description Usage Arguments Value Author(s) See Also Examples

View source: R/AllConstructors.R

Description

Constructor for the Transcriptogram object.

Usage

1

Arguments

association

A matrix, or data.frame, containing two columns of ENSEMBL Peptide IDs (character); or the path for a file containing two columns, no header, with rows composed by the ENSEMBL Peptide IDs of two proteins that are connected.

ordering

A character vector containing ordered ENSEMBL Peptide IDs; a data.frame containing two columns, the first one with ENSEMBL Peptide IDs (character), and the second containing its respective position (non-negative integer); or the path for a file containing two columns, a row for the headers, with rows composed respectively by a ENSEMBL Peptide ID and its respective position.

radius

An non-negative integer referring to the window radius required for some methods.

Value

A preprocessed object of class Transcriptogram.

Author(s)

Diego Morais

See Also

Transcriptogram-class, association, Hs900

Examples

1

transcriptogramer documentation built on Nov. 8, 2020, 8:17 p.m.