Subsampling of high throughput sequencing count data for use in experiment design and analysis.
|Author||David Robinson, John D. Storey, with contributions from Andrew J. Bass|
|Bioconductor views||DifferentialExpression GeneExpression RNASeq Sequencing Transcription|
|Date of publication||None|
|Maintainer||Andrew J. Bass <firstname.lastname@example.org>, John D. Storey <email@example.com>|
|License||MIT + file LICENSE|
combineSubsamples: combine multiple subsamples objects
generateSubsampledMatrix: Generate the read matrix corresponding to a particular level
getSeed: Extract the global random seed from a subsamples object
hammer: ExpressionSet results from Hammer et al 2010
plot.subsamples: plot metrics as a function of subsampled read depth
plot.summary.subsamples: plot metrics as a function of subsampled read depth
ss: Subsampling results using the hammer dataset
subsample: Subsample reads and perform statistical testing on each...
summary.subsamples: calculate summary statistics for each subsampled depth in a...
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