MBttest method was developed from beta t-test method of Baggerly et al(2003). Compared to baySeq (Hard castle and Kelly 2010), DESeq (Anders and Huber 2010) and exact test (Robinson and Smyth 2007, 2008) and the GLM of McCarthy et al(2012), MBttest is of high work efficiency,that is, it has high power, high conservativeness of FDR estimation and high stability. MBttest is suit- able to transcriptomic data, tag data, SAGE data (count data) from small samples or a few replicate libraries. It can be used to identify genes, mRNA isoforms or tags differentially expressed between two conditions.

Author | Yuan-De Tan |

Date of publication | None |

Maintainer | Yuan-De Tan <tanyuande@gmail.com> |

License | GPL-3 |

Version | 1.2.0 |

**betaparametab:** Estimation of Beta Parameters a And b

**betaparametVP:** Estimation of Binomal Parameters V And P in Count Data of RNA...

**betaparametw:** Estimation of Weights of Proportions

**betattest:** Beta t-test

**dat:** The Transcriptomic data and t-test results.

**jkttcell:** Jurkat T-cell Transcritomic Data

**maplot:** MA plot of t-values Against Log Mean

**mbetattest:** Performance of multiple beta t-test on simulated data

**MBttest-package:** Multiple Beta t-tests

**mtprocedure:** Multiple-Test Procedures

**mtpvadjust:** P-value Adjustment for Multiple Comparisons

**myheatmap:** Heatmap

**oddratio:** Calculation of Zeta

**pratio:** Calculation of Psi

**simulat:** Simulation Data

**skjt:** Simulated Null Transcriptomic data

**smbetattest:** Performance of multiple Beta t-test on simulated data

MBttest/DESCRIPTION

MBttest/NAMESPACE

MBttest/NEWS

MBttest/R

MBttest/R/betaparametVP.R
MBttest/R/betaparametab.R
MBttest/R/betaparametw.R
MBttest/R/betattest.R
MBttest/R/maplot.R
MBttest/R/mbetattest.R
MBttest/R/mtprocedure.R
MBttest/R/mtpvadjust.R
MBttest/R/myheatmap.R
MBttest/R/oddratio.R
MBttest/R/pratio.R
MBttest/R/simulat.R
MBttest/R/smbetattest.R
MBttest/build

MBttest/build/vignette.rds

MBttest/data

MBttest/data/dat.rda

MBttest/data/datalist

MBttest/data/jkttcell.rda

MBttest/data/skjt.rda

MBttest/inst

MBttest/inst/doc

MBttest/inst/doc/MBttest.R

MBttest/inst/doc/MBttest.Rnw

MBttest/inst/doc/MBttest.pdf

MBttest/man

MBttest/man/MBttest-package.Rd
MBttest/man/betaparametVP.Rd
MBttest/man/betaparametab.Rd
MBttest/man/betaparametw.Rd
MBttest/man/betattest.Rd
MBttest/man/dat.Rd
MBttest/man/jkttcell.Rd
MBttest/man/maplot.Rd
MBttest/man/mbetattest.Rd
MBttest/man/mtprocedure.Rd
MBttest/man/mtpvadjust.Rd
MBttest/man/myheatmap.Rd
MBttest/man/oddratio.Rd
MBttest/man/pratio.Rd
MBttest/man/simulat.Rd
MBttest/man/skjt.Rd
MBttest/man/smbetattest.Rd
MBttest/vignettes

MBttest/vignettes/Figure1.png

MBttest/vignettes/Figure2.png

MBttest/vignettes/Figure3.png

MBttest/vignettes/MBttest.Rnw

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