MBttest: Multiple Beta t-Tests

Share:

MBttest method was developed from beta t-test method of Baggerly et al(2003). Compared to baySeq (Hard castle and Kelly 2010), DESeq (Anders and Huber 2010) and exact test (Robinson and Smyth 2007, 2008) and the GLM of McCarthy et al(2012), MBttest is of high work efficiency,that is, it has high power, high conservativeness of FDR estimation and high stability. MBttest is suit- able to transcriptomic data, tag data, SAGE data (count data) from small samples or a few replicate libraries. It can be used to identify genes, mRNA isoforms or tags differentially expressed between two conditions.

Author
Yuan-De Tan
Date of publication
None
Maintainer
Yuan-De Tan <tanyuande@gmail.com>
License
GPL-3
Version
1.2.0

View on Bioconductor

Man pages

betaparametab
Estimation of Beta Parameters a And b
betaparametVP
Estimation of Binomal Parameters V And P in Count Data of RNA...
betaparametw
Estimation of Weights of Proportions
betattest
Beta t-test
dat
The Transcriptomic data and t-test results.
jkttcell
Jurkat T-cell Transcritomic Data
maplot
MA plot of t-values Against Log Mean
mbetattest
Performance of multiple beta t-test on simulated data
MBttest-package
Multiple Beta t-tests
mtprocedure
Multiple-Test Procedures
mtpvadjust
P-value Adjustment for Multiple Comparisons
myheatmap
Heatmap
oddratio
Calculation of Zeta
pratio
Calculation of Psi
simulat
Simulation Data
skjt
Simulated Null Transcriptomic data
smbetattest
Performance of multiple Beta t-test on simulated data

Files in this package

MBttest/DESCRIPTION
MBttest/NAMESPACE
MBttest/NEWS
MBttest/R
MBttest/R/betaparametVP.R
MBttest/R/betaparametab.R
MBttest/R/betaparametw.R
MBttest/R/betattest.R
MBttest/R/maplot.R
MBttest/R/mbetattest.R
MBttest/R/mtprocedure.R
MBttest/R/mtpvadjust.R
MBttest/R/myheatmap.R
MBttest/R/oddratio.R
MBttest/R/pratio.R
MBttest/R/simulat.R
MBttest/R/smbetattest.R
MBttest/build
MBttest/build/vignette.rds
MBttest/data
MBttest/data/dat.rda
MBttest/data/datalist
MBttest/data/jkttcell.rda
MBttest/data/skjt.rda
MBttest/inst
MBttest/inst/doc
MBttest/inst/doc/MBttest.R
MBttest/inst/doc/MBttest.Rnw
MBttest/inst/doc/MBttest.pdf
MBttest/man
MBttest/man/MBttest-package.Rd
MBttest/man/betaparametVP.Rd
MBttest/man/betaparametab.Rd
MBttest/man/betaparametw.Rd
MBttest/man/betattest.Rd
MBttest/man/dat.Rd
MBttest/man/jkttcell.Rd
MBttest/man/maplot.Rd
MBttest/man/mbetattest.Rd
MBttest/man/mtprocedure.Rd
MBttest/man/mtpvadjust.Rd
MBttest/man/myheatmap.Rd
MBttest/man/oddratio.Rd
MBttest/man/pratio.Rd
MBttest/man/simulat.Rd
MBttest/man/skjt.Rd
MBttest/man/smbetattest.Rd
MBttest/vignettes
MBttest/vignettes/Figure1.png
MBttest/vignettes/Figure2.png
MBttest/vignettes/Figure3.png
MBttest/vignettes/MBttest.Rnw