GSRI: Gene Set Regulation Index

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The GSRI package estimates the number of differentially expressed genes in gene sets, utilizing the concept of the Gene Set Regulation Index (GSRI).

Author
Julian Gehring, Kilian Bartholome, Clemens Kreutz, Jens Timmer
Date of publication
None
Maintainer
Julian Gehring <jg-bioc@gmx.com>
License
GPL-3
Version
2.22.0

View on Bioconductor

Man pages

export
Export results to file
get-methods
Get methods for 'Gsri' class
gsri
Methods for the Gene Set Regulation Index (GSRI)
Gsri-class
Class 'Gsri'
GSRI-internal
Internal functions
GSRI-package
Gene Set Regulation Index (GSRI) package
plot
Visualize GSRI results
read-functions
Import of '.cls' and '.gct' files
sortGsri
Sort GSRI results
test-functions
Statistical test functions

Files in this package

GSRI/DESCRIPTION
GSRI/NAMESPACE
GSRI/NEWS
GSRI/R
GSRI/R/allClasses.R
GSRI/R/allExportedFunctions.R
GSRI/R/allInternal.R
GSRI/R/allMethods.R
GSRI/build
GSRI/build/vignette.rds
GSRI/inst
GSRI/inst/CITATION
GSRI/inst/doc
GSRI/inst/doc/gsri.R
GSRI/inst/doc/gsri.Rnw
GSRI/inst/doc/gsri.pdf
GSRI/inst/extdata
GSRI/inst/extdata/c1c10.gmt
GSRI/inst/extdata/c1c10.xml
GSRI/inst/extdata/c1chr17.xml
GSRI/man
GSRI/man/GSRI-internal.Rd
GSRI/man/GSRI-package.Rd
GSRI/man/Gsri-class.Rd
GSRI/man/export.Rd
GSRI/man/get-methods.Rd
GSRI/man/gsri.Rd
GSRI/man/plot.Rd
GSRI/man/read-functions.Rd
GSRI/man/sortGsri.Rd
GSRI/man/test-functions.Rd
GSRI/vignettes
GSRI/vignettes/gsri.Rnw
GSRI/vignettes/references.bib