GSRI: Gene Set Regulation Index
Version 2.24.0

The GSRI package estimates the number of differentially expressed genes in gene sets, utilizing the concept of the Gene Set Regulation Index (GSRI).

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AuthorJulian Gehring, Kilian Bartholome, Clemens Kreutz, Jens Timmer
Bioconductor views DifferentialExpression GeneRegulation GeneSetEnrichment Microarray Transcription
Date of publicationNone
MaintainerJulian Gehring <jg-bioc@gmx.com>
LicenseGPL-3
Version2.24.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("GSRI")

Man pages

export: Export results to file
get-methods: Get methods for 'Gsri' class
gsri: Methods for the Gene Set Regulation Index (GSRI)
Gsri-class: Class 'Gsri'
GSRI-internal: Internal functions
GSRI-package: Gene Set Regulation Index (GSRI) package
plot: Visualize GSRI results
read-functions: Import of '.cls' and '.gct' files
sortGsri: Sort GSRI results
test-functions: Statistical test functions

Functions

GSRI Man page
GSRI-internal Man page
GSRI-package Man page
Gsri Man page
Gsri-class Man page
bootInGroups Man page Source code
calcGsri Man page Source code
export Man page
export,Gsri,character-method Man page
getArgs Man page Source code
getCdf Man page
getCdf,Gsri,ANY-method Man page
getCdf,Gsri,missing-method Man page
getGsri Man page
getGsri,Gsri,ANY-method Man page
getGsri,Gsri,missing-method Man page
getParms Man page
getParms,Gsri-method Man page
gsri Man page
gsri,ExpressionSet,factor,GeneSet-method Man page
gsri,ExpressionSet,factor,GeneSetCollection-method Man page
gsri,ExpressionSet,factor,missing-method Man page
gsri,matrix,factor,GeneSet-method Man page
gsri,matrix,factor,GeneSetCollection-method Man page
gsri,matrix,factor,missing-method Man page
gsri-methods Man page
gsriBoot Man page Source code
limmat Man page Source code
multiStat Man page Source code
plot Man page
plot,Gsri,ANY-method Man page
plot,Gsri,integer-method Man page
readCls Man page
readCls,character-method Man page
readGct Man page
readGct,character-method Man page
rowF Man page Source code
rowt Man page Source code
show Man page
show,Gsri-method Man page
sortGsri Man page
sortGsri,Gsri-method Man page
sortGsri-methods Man page
summary Man page
summary,Gsri-method Man page

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/allClasses.R
R/allExportedFunctions.R
R/allInternal.R
R/allMethods.R
build
build/vignette.rds
inst
inst/CITATION
inst/doc
inst/doc/gsri.R
inst/doc/gsri.Rnw
inst/doc/gsri.pdf
inst/extdata
inst/extdata/c1c10.gmt
inst/extdata/c1c10.xml
inst/extdata/c1chr17.xml
man
man/GSRI-internal.Rd
man/GSRI-package.Rd
man/Gsri-class.Rd
man/export.Rd
man/get-methods.Rd
man/gsri.Rd
man/plot.Rd
man/read-functions.Rd
man/sortGsri.Rd
man/test-functions.Rd
vignettes
vignettes/gsri.Rnw
vignettes/references.bib
GSRI documentation built on May 20, 2017, 10:26 p.m.