GSRI: Gene Set Regulation Index

The GSRI package estimates the number of differentially expressed genes in gene sets, utilizing the concept of the Gene Set Regulation Index (GSRI).

AuthorJulian Gehring, Kilian Bartholome, Clemens Kreutz, Jens Timmer
Date of publicationNone
MaintainerJulian Gehring <jg-bioc@gmx.com>
LicenseGPL-3
Version2.22.0

View on Bioconductor

Functions

bootInGroups Man page
calcGsri Man page
export Man page
export,Gsri,character-method Man page
getArgs Man page
getCdf Man page
getCdf,Gsri,ANY-method Man page
getCdf,Gsri,missing-method Man page
getGsri Man page
getGsri,Gsri,ANY-method Man page
getGsri,Gsri,missing-method Man page
getParms Man page
getParms,Gsri-method Man page
gsri Man page
Gsri Man page
GSRI Man page
gsriBoot Man page
Gsri-class Man page
gsri,ExpressionSet,factor,GeneSetCollection-method Man page
gsri,ExpressionSet,factor,GeneSet-method Man page
gsri,ExpressionSet,factor,missing-method Man page
GSRI-internal Man page
gsri,matrix,factor,GeneSetCollection-method Man page
gsri,matrix,factor,GeneSet-method Man page
gsri,matrix,factor,missing-method Man page
gsri-methods Man page
GSRI-package Man page
limmat Man page
multiStat Man page
plot Man page
plot,Gsri,ANY-method Man page
plot,Gsri,integer-method Man page
readCls Man page
readCls,character-method Man page
readGct Man page
readGct,character-method Man page
rowF Man page
rowt Man page
show Man page
show,Gsri-method Man page
sortGsri Man page
sortGsri,Gsri-method Man page
sortGsri-methods Man page
summary Man page
summary,Gsri-method Man page

Files

GSRI/DESCRIPTION
GSRI/NAMESPACE
GSRI/NEWS
GSRI/R
GSRI/R/allClasses.R GSRI/R/allExportedFunctions.R GSRI/R/allInternal.R GSRI/R/allMethods.R
GSRI/build
GSRI/build/vignette.rds
GSRI/inst
GSRI/inst/CITATION
GSRI/inst/doc
GSRI/inst/doc/gsri.R
GSRI/inst/doc/gsri.Rnw
GSRI/inst/doc/gsri.pdf
GSRI/inst/extdata
GSRI/inst/extdata/c1c10.gmt
GSRI/inst/extdata/c1c10.xml
GSRI/inst/extdata/c1chr17.xml
GSRI/man
GSRI/man/GSRI-internal.Rd GSRI/man/GSRI-package.Rd GSRI/man/Gsri-class.Rd GSRI/man/export.Rd GSRI/man/get-methods.Rd GSRI/man/gsri.Rd GSRI/man/plot.Rd GSRI/man/read-functions.Rd GSRI/man/sortGsri.Rd GSRI/man/test-functions.Rd
GSRI/vignettes
GSRI/vignettes/gsri.Rnw
GSRI/vignettes/references.bib

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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