Access and extract results from an object of class
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An object of class
Optional argument used to subset the results of
individual gene sets. For details, see the
Additional arguments, currently not used.
getGsri returns a data frame with the results of the GSRI analysis,
equivalent to the display of the
show method. For each
gene set it contains the estimated fraction and total number of
regulated genes, the standard deviation of the estimated fraction,
the GSRI, and the total number of genes in the analysis.
getCdf returns a data frame with ECDF of the p-values for a gene
getParms returns a list with the parameters used in the analysis,
including the weights (
weight) for each gene in the gene set, the
nBoot) of bootstraps for the calculation of the GSRI, the
test) and its arguments (
testArgs) used for assessing
the differential effect between the groups, the confidence level for
the GSRI, and the application of the Grenander estimatior
grenander) in the calculation of the ECDF.
getCdf return data frame with the results from the
GSRI analysis and the ECDF, respectively.
getParms returns a list
with the parameters used in the analysis.
If more than one gene set is accessed, a list with one element per gene set is returned.
Maintainer: Julian Gehring <[email protected]>
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