GSRI-internal: Internal functions
In GSRI: Gene Set Regulation Index

Description Usage Details Author(s) References See Also

Internal functions of the GSRI package

calcGsri(exprs, groups, name, id, weights, grenander=TRUE, nBoot=100,
test=NULL, testArgs=NULL, alpha=0.05, verbose=FALSE, ...)
multiStat(exprs, groups, id, index, test, testArgs)
gsriBoot(exprs, groups, weights, id, grenander, test, testArgs, nSamples)
bootInGroups(nSamples)
getArgs(name, first=NULL, last=NULL, ...)

Internal functions of the GSRI package. Users should not call them directly, but rather use the gsri methods.

Julian Gehring

Maintainer: Julian Gehring <julian.gehring@fdm.uni-freiburg.de>

The GSRI package uses the functionality of the following packages:

Julian Gehring, Clemens Kreutz, Jens Timmer: les: Identifying Loci of Enhanced Significance in Tiling Microarray Data http://bioconductor.org/help/bioc-views/release/bioc/html/les.html

Korbinian Strimmer: fdrtool: Estimation and Control of (Local) False Discovery Rates. http://CRAN.R-project.org/package=fdrtool

Robert Gentleman, Vincent J. Carey, Wolfgang Huber, Florian Hahne: genefilter: methods for filtering genes from microarray experiments. http://bioconductor.org/help/bioc-views/release/bioc/html/genefilter.html

Package: GSRI-package

Class: Gsri

Methods: gsri getGsri getCdf getParms export sortGsri plot show summary readCls readGct