ALPS: AnaLysis routines for ePigenomicS data

The package provides analysis and publication quality visualization routines for genome-wide epigenomics data such as histone modification or transcription factor ChIP-seq, ATAC-seq, DNase-seq etc. The functions in the package can be used with any type of data that can be represented with bigwig files at any resolution. The goal of the ALPS is to provide analysis tools for most downstream analysis without leaving the R environment and most tools in the package require a minimal input that can be prepared with basic R, unix or excel skills.

Package details

AuthorVenu Thatikonda, Natalie Jäger
Bioconductor views ATACSeq ChIPSeq Epigenetics HistoneModification Sequencing Transcription Visualization
MaintainerVenu Thatikonda <>
LicenseMIT + file LICENSE
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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ALPS documentation built on Nov. 8, 2020, 5:52 p.m.