Files in ALPS
AnaLysis routines for ePigenomicS data

NEWS
LICENSE
DESCRIPTION
README.md
.BBSoptions
NAMESPACE
inst/doc/ALPS-vignette.Rmd inst/doc/ALPS-vignette.R
inst/doc/ALPS-vignette.html
inst/script/DATASET.R
inst/figures/README-ALPS-overview.png
inst/extdata/overlap_violins/data_table_4_overlapviolins.txt
inst/extdata/overlap_violins/enrichemnts_4_overlapviolins.txt
inst/extdata/bw/BRCA_000CFD9F_T2.bw
inst/extdata/bw/ACCx_025FE5F8_T2.bw
inst/extdata/bw/GBMx_1.bed
inst/extdata/bw/ACCx_025FE5F8_T1.bw
inst/extdata/bw/BRCA_01112370_T1.bw
inst/extdata/bw/LGGx_2.bed
inst/extdata/bw/ACCx_1.bed
inst/extdata/bw/LGGx_116B070A_T1.bw
inst/extdata/bw/GBMx_09C0DCE7_T1.bw
inst/extdata/bw/ACCx_2.bed
inst/extdata/bw/BRCA_2.bed
inst/extdata/bw/LGGx_116B070A_T2.bw
inst/extdata/bw/ALPS_example_datatable.txt
inst/extdata/bw/LGGx_1.bed
inst/extdata/bw/GBMx_09C0DCE7_T2.bw
inst/extdata/bw/BRCA_1.bed
inst/extdata/bw/GBMx_2.bed
inst/extdata/motifs/MA0147.2.jaspar
inst/extdata/motifs/cmyc.homer
inst/extdata/motifs/MA0147.2.meme
inst/extdata/motifs/MA0147.2.pfm
inst/extdata/motifs/MA0147.2.transfac
vignettes/README-ALPS-overview.png
vignettes/ALPS-vignette.Rmd
vignettes/ALPS-ref.bib
vignettes/README-bigwig-overview.png
R/plot_browser_tracks.R R/get_genomic_annotations.R R/global_vars.R R/ALPS-package.r R/plot_motif_logo.R R/plot_genomic_annotations.R R/get_variable_regions.R R/plot_correlation.R R/utils-pipe.R R/multiBigwig_summary.R R/plot_enrichments.R man/process_jaspar.Rd man/plot_correlation.Rd man/ALPS-package.Rd man/process_homer.Rd man/process_transfac.Rd man/get_genomic_annotations.Rd man/process_pfm.Rd man/get_variable_regions.Rd man/process_meme.Rd man/multiBigwig_summary.Rd man/merge_GR.Rd man/plot_browser_tracks.Rd man/pipe.Rd man/plot_genomic_annotations.Rd man/plot_motif_logo.Rd man/plot_enrichments.Rd
build/vignette.rds
tests/testthat.R tests/testthat/test-get_variable_regions.R tests/testthat/test-multiBigwig_summary.R tests/testthat/test-get_genomic_annotations.R
ALPS documentation built on Oct. 31, 2019, 5:29 a.m.