eisaR: Exon-Intron Split Analysis (EISA) in R

Exon-intron split analysis (EISA) uses ordinary RNA-seq data to measure changes in mature RNA and pre-mRNA reads across different experimental conditions to quantify transcriptional and post-transcriptional regulation of gene expression. For details see Gaidatzis et al., Nat Biotechnol 2015. doi: 10.1038/nbt.3269. eisaR implements the major steps of EISA in R.

Package details

AuthorMichael Stadler [aut, cre], Dimos Gaidatzis [aut], Lukas Burger [aut], Charlotte Soneson [aut]
Bioconductor views FunctionalGenomics GeneExpression GeneRegulation RNASeq Regression Transcription Transcriptomics
MaintainerMichael Stadler <michael.stadler@fmi.ch>
URL https://github.com/fmicompbio/eisaR
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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eisaR documentation built on Nov. 8, 2020, 8:26 p.m.