XiDsLab/PLNet: PLNet: Sparse precision matrix estimation via lasso penalized D-trace loss in the multivariate Poisson log-normal model

PLNet is a package for calculating the precision matrix of poission log-normal model using moment method and dtrace loss. We first calculate the covariance matrix by moment method and then infer the precision matrix by dtrace loss using R package EQUAL.

Getting started

Package details

AuthorFeiyi Xiao, Junjie Tang
Bioconductor views Gene Regulatory Network Inference SingleCell Software Transcription
MaintainerJunjie Tang <junjie.tang@pku.edu.cn>
URL https://github.com/XiDsLab/PLNet
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
XiDsLab/PLNet documentation built on Dec. 18, 2021, 7:21 p.m.