DEFormats: Differential gene expression data formats converter

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Covert between different data formats used by differential gene expression analysis tools.

Author
Andrzej Oleś
Date of publication
None
Maintainer
Andrzej Oleś <andrzej.oles@embl.de>
License
GPL-3
Version
1.2.0
URLs

View on Bioconductor

Man pages

as.DESeqDataSet
Convert to DESeqDataSet
as.DGEList
Convert to DGEList
DEFormats
Convert Between Differential Gene Expression Data Formats
DGEList
DGEList Constructor Generic
simulateNormFactors
Simulate Normalization Factors
simulateRnaSeqData
Example counts table of RNA-seq data

Files in this package

DEFormats/DESCRIPTION
DEFormats/NAMESPACE
DEFormats/R
DEFormats/R/AllGenerics.R
DEFormats/R/DEFormats.R
DEFormats/R/methods.R
DEFormats/R/simulateNormFactors.R
DEFormats/R/simulateRnaSeqData.R
DEFormats/README.md
DEFormats/build
DEFormats/build/vignette.rds
DEFormats/inst
DEFormats/inst/NEWS.Rd
DEFormats/inst/doc
DEFormats/inst/doc/DEFormats.R
DEFormats/inst/doc/DEFormats.Rmd
DEFormats/inst/doc/DEFormats.html
DEFormats/man
DEFormats/man-roxygen
DEFormats/man-roxygen/author.R
DEFormats/man/DEFormats.Rd
DEFormats/man/DGEList.Rd
DEFormats/man/as.DESeqDataSet.Rd
DEFormats/man/as.DGEList.Rd
DEFormats/man/simulateNormFactors.Rd
DEFormats/man/simulateRnaSeqData.Rd
DEFormats/tests
DEFormats/tests/testthat
DEFormats/tests/testthat.R
DEFormats/tests/testthat/test-DGEList.R
DEFormats/tests/testthat/test-as.DESeqDataSet.R
DEFormats/tests/testthat/test-as.DGEList.R
DEFormats/tests/testthat/test-simulateNormFactors.R
DEFormats/tests/testthat/test-simulateRnaSeqData.R
DEFormats/tests/testthat/utils.R
DEFormats/vignettes
DEFormats/vignettes/DEFormats.Rmd