DEFormats: Differential gene expression data formats converter
Version 1.4.0

Covert between different data formats used by differential gene expression analysis tools.

Browse man pages Browse package API and functions Browse package files

AuthorAndrzej Oleś
Bioconductor views DifferentialExpression GeneExpression RNASeq Sequencing Transcription
Date of publicationNone
MaintainerAndrzej Oleś <andrzej.oles@embl.de>
LicenseGPL-3
Version1.4.0
URL https://github.com/aoles/DEFormats
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("DEFormats")

Man pages

as.DESeqDataSet: Convert to DESeqDataSet
as.DGEList: Convert to DGEList
DEFormats: Convert Between Differential Gene Expression Data Formats
DGEList: DGEList Constructor Generic
simulateNormFactors: Simulate Normalization Factors
simulateRnaSeqData: Example counts table of RNA-seq data

Functions

DEFormats Man page
DEFormats-package Man page
DGEList Man page
DGEList,RangedSummarizedExperiment-method Man page
as.DESeqDataSet Man page Source code
as.DESeqDataSet.DGEList Man page Source code
as.DGEList Man page Source code
as.DGEList.DESeqDataSet Man page Source code
simulateNormFactors Man page Source code
simulateRnaSeqData Man page Source code

Files

DESCRIPTION
NAMESPACE
R
R/AllGenerics.R
R/DEFormats.R
R/methods.R
R/simulateNormFactors.R
R/simulateRnaSeqData.R
README.md
build
build/vignette.rds
inst
inst/NEWS.Rd
inst/doc
inst/doc/DEFormats.R
inst/doc/DEFormats.Rmd
inst/doc/DEFormats.html
man
man-roxygen
man-roxygen/author.R
man/DEFormats.Rd
man/DGEList.Rd
man/as.DESeqDataSet.Rd
man/as.DGEList.Rd
man/simulateNormFactors.Rd
man/simulateRnaSeqData.Rd
tests
tests/testthat
tests/testthat.R
tests/testthat/test-DGEList.R
tests/testthat/test-as.DESeqDataSet.R
tests/testthat/test-as.DGEList.R
tests/testthat/test-simulateNormFactors.R
tests/testthat/test-simulateRnaSeqData.R
tests/testthat/utils.R
vignettes
vignettes/DEFormats.Rmd
DEFormats documentation built on May 20, 2017, 10:19 p.m.